miRNA display CGI


Results 1 - 20 of 303 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24571 5' -58.3 NC_005264.1 + 20071 0.66 0.860133
Target:  5'- cCCGaAAugGCuaGCGCgGCCGCGGc -3'
miRNA:   3'- cGGUcUUugUGcgCGUGgCGGCGCCu -5'
24571 5' -58.3 NC_005264.1 + 19871 0.66 0.860133
Target:  5'- uGCCcgAGAGAC-CGC-CGCgGCCGCGc- -3'
miRNA:   3'- -CGG--UCUUUGuGCGcGUGgCGGCGCcu -5'
24571 5' -58.3 NC_005264.1 + 127408 0.66 0.860133
Target:  5'- cGCCGGAcGCgGCGCGUugaaGCUGcCGGAg -3'
miRNA:   3'- -CGGUCUuUG-UGCGCGugg-CGGC-GCCU- -5'
24571 5' -58.3 NC_005264.1 + 152529 0.66 0.860133
Target:  5'- uGCuCAGu-GCGCGuCGCugCGCC-CGGu -3'
miRNA:   3'- -CG-GUCuuUGUGC-GCGugGCGGcGCCu -5'
24571 5' -58.3 NC_005264.1 + 112563 0.66 0.860133
Target:  5'- aGCCGcuacGCACGaGCaacucggaaucGCCGCCGCGGc -3'
miRNA:   3'- -CGGUcuu-UGUGCgCG-----------UGGCGGCGCCu -5'
24571 5' -58.3 NC_005264.1 + 129524 0.66 0.860133
Target:  5'- uGCuCAGu-GCGCGuCGCugCGCC-CGGu -3'
miRNA:   3'- -CG-GUCuuUGUGC-GCGugGCGGcGCCu -5'
24571 5' -58.3 NC_005264.1 + 114926 0.66 0.860133
Target:  5'- cGCgCGGGuucuGCACGCGCGCgGCucaugcucaaaCGcCGGAc -3'
miRNA:   3'- -CG-GUCUu---UGUGCGCGUGgCG-----------GC-GCCU- -5'
24571 5' -58.3 NC_005264.1 + 70060 0.66 0.860133
Target:  5'- uGCUGGgcGCgaaGCGCGuCCGCCGUaGGGg -3'
miRNA:   3'- -CGGUCuuUGug-CGCGU-GGCGGCG-CCU- -5'
24571 5' -58.3 NC_005264.1 + 34654 0.66 0.860133
Target:  5'- uCCuGAAGCGCGCGCAaauaG-UGCGGGa -3'
miRNA:   3'- cGGuCUUUGUGCGCGUgg--CgGCGCCU- -5'
24571 5' -58.3 NC_005264.1 + 33507 0.66 0.860133
Target:  5'- cGCCGGAGGCgacggaaccacuGCGgGCGugggcuuaggcgUCGCCGCGuGGu -3'
miRNA:   3'- -CGGUCUUUG------------UGCgCGU------------GGCGGCGC-CU- -5'
24571 5' -58.3 NC_005264.1 + 34820 0.66 0.860133
Target:  5'- aCCGGugGC-CGCGaaCACC-CCGCGGGc -3'
miRNA:   3'- cGGUCuuUGuGCGC--GUGGcGGCGCCU- -5'
24571 5' -58.3 NC_005264.1 + 52092 0.66 0.860133
Target:  5'- aCCGGAGACaauuuuuugACGCGUucuuccgcaugACCGCCGUcucgcccgaGGAg -3'
miRNA:   3'- cGGUCUUUG---------UGCGCG-----------UGGCGGCG---------CCU- -5'
24571 5' -58.3 NC_005264.1 + 77986 0.66 0.860133
Target:  5'- cGCCGucAAUGC-CGuCugCGCCGCGGu -3'
miRNA:   3'- -CGGUcuUUGUGcGC-GugGCGGCGCCu -5'
24571 5' -58.3 NC_005264.1 + 96849 0.66 0.860133
Target:  5'- aCCGGGggUGCGCuaaCGCCGCgCGCGa- -3'
miRNA:   3'- cGGUCUuuGUGCGc--GUGGCG-GCGCcu -5'
24571 5' -58.3 NC_005264.1 + 117518 0.66 0.860133
Target:  5'- uGCaaagaAGGGACGaccCGCGCACgcuucucaguCGCaCGCGGAg -3'
miRNA:   3'- -CGg----UCUUUGU---GCGCGUG----------GCG-GCGCCU- -5'
24571 5' -58.3 NC_005264.1 + 154645 0.66 0.860133
Target:  5'- cGCCGGAcGCgGCGCGUugaaGCUGcCGGAg -3'
miRNA:   3'- -CGGUCUuUG-UGCGCGugg-CGGC-GCCU- -5'
24571 5' -58.3 NC_005264.1 + 19249 0.66 0.860133
Target:  5'- cGCgGGAAGCGCGCu--UC-CCGCGGGu -3'
miRNA:   3'- -CGgUCUUUGUGCGcguGGcGGCGCCU- -5'
24571 5' -58.3 NC_005264.1 + 63028 0.66 0.859386
Target:  5'- gGCgAcGAAACGCGaCGCggaaauaaagaagGCCGCgGCGGc -3'
miRNA:   3'- -CGgU-CUUUGUGC-GCG-------------UGGCGgCGCCu -5'
24571 5' -58.3 NC_005264.1 + 75560 0.66 0.854097
Target:  5'- cGCCAGAAACuauuuacucguuCGCggcaaagcuucucgaGCAUCGuuGCGGc -3'
miRNA:   3'- -CGGUCUUUGu-----------GCG---------------CGUGGCggCGCCu -5'
24571 5' -58.3 NC_005264.1 + 72755 0.66 0.852569
Target:  5'- aGCUuccguGACGCGUGCGCCGuaGCGa- -3'
miRNA:   3'- -CGGucu--UUGUGCGCGUGGCggCGCcu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.