miRNA display CGI


Results 1 - 20 of 303 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24571 5' -58.3 NC_005264.1 + 29795 1.11 0.001561
Target:  5'- aGCCAGAAACACGCGCACCGCCGCGGAa -3'
miRNA:   3'- -CGGUCUUUGUGCGCGUGGCGGCGCCU- -5'
24571 5' -58.3 NC_005264.1 + 37549 0.86 0.069219
Target:  5'- cGUCAGGcgaAGCGacaGCGCGCCGCCGCGGAg -3'
miRNA:   3'- -CGGUCU---UUGUg--CGCGUGGCGGCGCCU- -5'
24571 5' -58.3 NC_005264.1 + 64507 0.82 0.131845
Target:  5'- cGCCuGGAcCGCGCuguucuguccGCGCCGCCGCGGAg -3'
miRNA:   3'- -CGGuCUUuGUGCG----------CGUGGCGGCGCCU- -5'
24571 5' -58.3 NC_005264.1 + 16766 0.81 0.157152
Target:  5'- gGCCGGAGuCAUGUGCGCCGCCGCc-- -3'
miRNA:   3'- -CGGUCUUuGUGCGCGUGGCGGCGccu -5'
24571 5' -58.3 NC_005264.1 + 20523 0.8 0.173517
Target:  5'- aGCCAGggGCACGCGUugCGCC-CGu- -3'
miRNA:   3'- -CGGUCuuUGUGCGCGugGCGGcGCcu -5'
24571 5' -58.3 NC_005264.1 + 72060 0.8 0.173517
Target:  5'- cGUCGGgcGCcCGCGUGCCGUCGCGGAa -3'
miRNA:   3'- -CGGUCuuUGuGCGCGUGGCGGCGCCU- -5'
24571 5' -58.3 NC_005264.1 + 159438 0.8 0.17784
Target:  5'- cGCCAGGAG-GCGCGaagaauUACCGCCGCGGGg -3'
miRNA:   3'- -CGGUCUUUgUGCGC------GUGGCGGCGCCU- -5'
24571 5' -58.3 NC_005264.1 + 122615 0.8 0.17784
Target:  5'- cGCCAGGAG-GCGCGaagaauUACCGCCGCGGGg -3'
miRNA:   3'- -CGGUCUUUgUGCGC------GUGGCGGCGCCU- -5'
24571 5' -58.3 NC_005264.1 + 97424 0.79 0.210846
Target:  5'- cGgCAGuGAGCgcuGCGgGCGCCGCCGCGGAu -3'
miRNA:   3'- -CgGUC-UUUG---UGCgCGUGGCGGCGCCU- -5'
24571 5' -58.3 NC_005264.1 + 65347 0.78 0.226541
Target:  5'- gGCCAGAGA---GgGCGCCGCCGCGGu -3'
miRNA:   3'- -CGGUCUUUgugCgCGUGGCGGCGCCu -5'
24571 5' -58.3 NC_005264.1 + 1011 0.78 0.2398
Target:  5'- cGCCAGAGACAgaggcuaaagccggcCGCGCACCcaGCCGUacuGGAg -3'
miRNA:   3'- -CGGUCUUUGU---------------GCGCGUGG--CGGCG---CCU- -5'
24571 5' -58.3 NC_005264.1 + 62810 0.77 0.286082
Target:  5'- aCCGGAcGCA-GCaGCGCCGCCGCGGc -3'
miRNA:   3'- cGGUCUuUGUgCG-CGUGGCGGCGCCu -5'
24571 5' -58.3 NC_005264.1 + 158514 0.77 0.29267
Target:  5'- cGCCAGggGCAgGCcuGCGCUGUgGUGGAc -3'
miRNA:   3'- -CGGUCuuUGUgCG--CGUGGCGgCGCCU- -5'
24571 5' -58.3 NC_005264.1 + 123539 0.77 0.29267
Target:  5'- cGCCAGggGCAgGCcuGCGCUGUgGUGGAc -3'
miRNA:   3'- -CGGUCuuUGUgCG--CGUGGCGgCGCCU- -5'
24571 5' -58.3 NC_005264.1 + 136466 0.76 0.299377
Target:  5'- cGCuCAGAGACGgcgcCGCGCAgcCUGCCGCGGc -3'
miRNA:   3'- -CG-GUCUUUGU----GCGCGU--GGCGGCGCCu -5'
24571 5' -58.3 NC_005264.1 + 34992 0.76 0.327389
Target:  5'- cGCCGGGuucuaGAC-CGCcgGCCGCCGCGGAg -3'
miRNA:   3'- -CGGUCU-----UUGuGCGcgUGGCGGCGCCU- -5'
24571 5' -58.3 NC_005264.1 + 19094 0.76 0.327389
Target:  5'- aGCCAGGAcuGCAC-CGCGgCGgCGCGGAg -3'
miRNA:   3'- -CGGUCUU--UGUGcGCGUgGCgGCGCCU- -5'
24571 5' -58.3 NC_005264.1 + 107393 0.75 0.342106
Target:  5'- uGCCAac--CGCGCGCGCCGCCGCc-- -3'
miRNA:   3'- -CGGUcuuuGUGCGCGUGGCGGCGccu -5'
24571 5' -58.3 NC_005264.1 + 54701 0.75 0.365065
Target:  5'- cGCCAGAAuaa-GCGUACCGCCGCc-- -3'
miRNA:   3'- -CGGUCUUugugCGCGUGGCGGCGccu -5'
24571 5' -58.3 NC_005264.1 + 38876 0.74 0.378539
Target:  5'- uGCCGGAAagguGCugggcaacguggugAUGgGCGCCGCCGCGGc -3'
miRNA:   3'- -CGGUCUU----UG--------------UGCgCGUGGCGGCGCCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.