miRNA display CGI


Results 21 - 40 of 303 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24571 5' -58.3 NC_005264.1 + 72755 0.66 0.852569
Target:  5'- aGCUuccguGACGCGUGCGCCGuaGCGa- -3'
miRNA:   3'- -CGGucu--UUGUGCGCGUGGCggCGCcu -5'
24571 5' -58.3 NC_005264.1 + 129580 0.66 0.852569
Target:  5'- gGCgCGGAu-CGCGCGUucGCCGCUGCu-- -3'
miRNA:   3'- -CG-GUCUuuGUGCGCG--UGGCGGCGccu -5'
24571 5' -58.3 NC_005264.1 + 152473 0.66 0.852569
Target:  5'- gGCgCGGAu-CGCGCGUucGCCGCUGCu-- -3'
miRNA:   3'- -CG-GUCUuuGUGCGCG--UGGCGGCGccu -5'
24571 5' -58.3 NC_005264.1 + 144088 0.66 0.852569
Target:  5'- aCgAGAAACgucccacaaucgACGUGCGcCCGCCGCGc- -3'
miRNA:   3'- cGgUCUUUG------------UGCGCGU-GGCGGCGCcu -5'
24571 5' -58.3 NC_005264.1 + 6880 0.66 0.852569
Target:  5'- aGCCAGAgcguccgcgAGC-CGCGCAgucCCaGCgCGCGGc -3'
miRNA:   3'- -CGGUCU---------UUGuGCGCGU---GG-CG-GCGCCu -5'
24571 5' -58.3 NC_005264.1 + 69800 0.66 0.851802
Target:  5'- aGCgCAGcAGCACGCauucggcgcggacGaCGCCGCCGgGGu -3'
miRNA:   3'- -CG-GUCuUUGUGCG-------------C-GUGGCGGCgCCu -5'
24571 5' -58.3 NC_005264.1 + 34401 0.66 0.851802
Target:  5'- cGUCuuGGGACACGCcaaguauGCGCUccauGCCGCGGc -3'
miRNA:   3'- -CGGu-CUUUGUGCG-------CGUGG----CGGCGCCu -5'
24571 5' -58.3 NC_005264.1 + 24918 0.66 0.851802
Target:  5'- cGCUGGGGugACGCGaucuuauCGCCcgGCUGCGGu -3'
miRNA:   3'- -CGGUCUUugUGCGC-------GUGG--CGGCGCCu -5'
24571 5' -58.3 NC_005264.1 + 154807 0.66 0.844814
Target:  5'- aGgCGGAgGGCGCGgugGCGCCGUCGUGGc -3'
miRNA:   3'- -CgGUCU-UUGUGCg--CGUGGCGGCGCCu -5'
24571 5' -58.3 NC_005264.1 + 100185 0.66 0.844814
Target:  5'- cGCCAacGAGuucgguCGCGUGCugCGCUuggacgGCGGGc -3'
miRNA:   3'- -CGGU--CUUu-----GUGCGCGugGCGG------CGCCU- -5'
24571 5' -58.3 NC_005264.1 + 127245 0.66 0.844814
Target:  5'- aGgCGGAgGGCGCGgugGCGCCGUCGUGGc -3'
miRNA:   3'- -CgGUCU-UUGUGCg--CGUGGCGGCGCCu -5'
24571 5' -58.3 NC_005264.1 + 54133 0.66 0.844814
Target:  5'- cGCCAuguGguGCGCGCGguCUaaCGCGGAa -3'
miRNA:   3'- -CGGU---CuuUGUGCGCguGGcgGCGCCU- -5'
24571 5' -58.3 NC_005264.1 + 91656 0.66 0.844814
Target:  5'- gGCCAGGugggcAACACGUuauCCGC-GCGGAg -3'
miRNA:   3'- -CGGUCU-----UUGUGCGcguGGCGgCGCCU- -5'
24571 5' -58.3 NC_005264.1 + 76434 0.66 0.844814
Target:  5'- uGCguGAGACACGCGguC-GUCGCGc- -3'
miRNA:   3'- -CGguCUUUGUGCGCguGgCGGCGCcu -5'
24571 5' -58.3 NC_005264.1 + 94872 0.66 0.844814
Target:  5'- gGCCGuuauguGAAcguuGCG-GCGC-CCGCCGCGGc -3'
miRNA:   3'- -CGGU------CUU----UGUgCGCGuGGCGGCGCCu -5'
24571 5' -58.3 NC_005264.1 + 56784 0.66 0.844028
Target:  5'- cGCCuucGGAACAUaauggagGCGCAUCGCCGguguCGGu -3'
miRNA:   3'- -CGGu--CUUUGUG-------CGCGUGGCGGC----GCCu -5'
24571 5' -58.3 NC_005264.1 + 16819 0.66 0.844028
Target:  5'- aCCAGAGACgcacucgACGUGUcgAUCGCCGaGGAc -3'
miRNA:   3'- cGGUCUUUG-------UGCGCG--UGGCGGCgCCU- -5'
24571 5' -58.3 NC_005264.1 + 143927 0.66 0.842452
Target:  5'- cGCCAGGuauacGACaccauGCGCGCAaaaaucucgucacaaGCCGCGGu -3'
miRNA:   3'- -CGGUCU-----UUG-----UGCGCGUgg-------------CGGCGCCu -5'
24571 5' -58.3 NC_005264.1 + 138359 0.66 0.84166
Target:  5'- cGCCAaauaggcccuCACGaGUuauCCGCCGCGGAa -3'
miRNA:   3'- -CGGUcuuu------GUGCgCGu--GGCGGCGCCU- -5'
24571 5' -58.3 NC_005264.1 + 33822 0.66 0.840073
Target:  5'- cGCCGGcAAgGCuguagcuauuccccuGCGCGCCGCgGCaGAg -3'
miRNA:   3'- -CGGUCuUUgUG---------------CGCGUGGCGgCGcCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.