miRNA display CGI


Results 1 - 20 of 303 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24571 5' -58.3 NC_005264.1 + 365 0.67 0.776754
Target:  5'- uGCCAGAccuuAUugGUcuuuggggggcaGCGCCGgCGCGGu -3'
miRNA:   3'- -CGGUCUu---UGugCG------------CGUGGCgGCGCCu -5'
24571 5' -58.3 NC_005264.1 + 460 0.66 0.819636
Target:  5'- cGCCAGAAugaucuaaguggGCuucugccGCGUccaGCGCCGCCGCa-- -3'
miRNA:   3'- -CGGUCUU------------UG-------UGCG---CGUGGCGGCGccu -5'
24571 5' -58.3 NC_005264.1 + 1011 0.78 0.2398
Target:  5'- cGCCAGAGACAgaggcuaaagccggcCGCGCACCcaGCCGUacuGGAg -3'
miRNA:   3'- -CGGUCUUUGU---------------GCGCGUGG--CGGCG---CCU- -5'
24571 5' -58.3 NC_005264.1 + 2368 0.68 0.739515
Target:  5'- cGCCGGcAAugGagGgGCAaCGCCGCGGGg -3'
miRNA:   3'- -CGGUC-UUugUg-CgCGUgGCGGCGCCU- -5'
24571 5' -58.3 NC_005264.1 + 3290 0.73 0.431294
Target:  5'- cGCCAGAGucgugagcucgcGCGggauCGCGCGCCGUgcaaGCGGAg -3'
miRNA:   3'- -CGGUCUU------------UGU----GCGCGUGGCGg---CGCCU- -5'
24571 5' -58.3 NC_005264.1 + 3430 0.66 0.836875
Target:  5'- aGCgAGAcgagcgacgGACAUGCGCACCGUCucagccuagGUGGc -3'
miRNA:   3'- -CGgUCU---------UUGUGCGCGUGGCGG---------CGCCu -5'
24571 5' -58.3 NC_005264.1 + 3695 0.68 0.729961
Target:  5'- gGCgCGGAAAgG-GCGCACaguacuuGCCGCGGGc -3'
miRNA:   3'- -CG-GUCUUUgUgCGCGUGg------CGGCGCCU- -5'
24571 5' -58.3 NC_005264.1 + 4014 0.66 0.82876
Target:  5'- uGCCAGGAGCAgGUcu-CCGCgCGCaGGGa -3'
miRNA:   3'- -CGGUCUUUGUgCGcguGGCG-GCG-CCU- -5'
24571 5' -58.3 NC_005264.1 + 5723 0.67 0.803421
Target:  5'- --gAGAAACccgcucCGCGCGagaCGCCGCGGc -3'
miRNA:   3'- cggUCUUUGu-----GCGCGUg--GCGGCGCCu -5'
24571 5' -58.3 NC_005264.1 + 5983 0.67 0.794669
Target:  5'- uGCCAGu-ACAUuaGCAgCGCgGCGGu -3'
miRNA:   3'- -CGGUCuuUGUGcgCGUgGCGgCGCCu -5'
24571 5' -58.3 NC_005264.1 + 6809 0.66 0.82876
Target:  5'- aGCCAuGAGGCGuccacCGCGCAagCGUCGcCGGGc -3'
miRNA:   3'- -CGGU-CUUUGU-----GCGCGUg-GCGGC-GCCU- -5'
24571 5' -58.3 NC_005264.1 + 6880 0.66 0.852569
Target:  5'- aGCCAGAgcguccgcgAGC-CGCGCAgucCCaGCgCGCGGc -3'
miRNA:   3'- -CGGUCU---------UUGuGCGCGU---GG-CG-GCGCCu -5'
24571 5' -58.3 NC_005264.1 + 7093 0.67 0.775845
Target:  5'- cGCCcacGGAAagccGCGCGCugggacuGCGCgGCuCGCGGAc -3'
miRNA:   3'- -CGG---UCUU----UGUGCG-------CGUGgCG-GCGCCU- -5'
24571 5' -58.3 NC_005264.1 + 7355 0.69 0.70085
Target:  5'- aCCGGcAAAauCugGCG-GCCGCCGCGGu -3'
miRNA:   3'- cGGUC-UUU--GugCGCgUGGCGGCGCCu -5'
24571 5' -58.3 NC_005264.1 + 7577 0.71 0.571731
Target:  5'- cGCCGccuACcC-CGCGCCGCUGCGGAg -3'
miRNA:   3'- -CGGUcuuUGuGcGCGUGGCGGCGCCU- -5'
24571 5' -58.3 NC_005264.1 + 7920 0.74 0.408997
Target:  5'- gGCUAGcAACGCGCGCguccacgcgucguccACgGCCGCGGc -3'
miRNA:   3'- -CGGUCuUUGUGCGCG---------------UGgCGGCGCCu -5'
24571 5' -58.3 NC_005264.1 + 8423 0.74 0.397293
Target:  5'- gGCCAGAcuaaccgcGCugGCGUACUcggaccagcgGCCGCGGGg -3'
miRNA:   3'- -CGGUCUu-------UGugCGCGUGG----------CGGCGCCU- -5'
24571 5' -58.3 NC_005264.1 + 8908 0.68 0.71062
Target:  5'- cGCUGGAGACGCGCGUcuucagguACU--CGCGGAa -3'
miRNA:   3'- -CGGUCUUUGUGCGCG--------UGGcgGCGCCU- -5'
24571 5' -58.3 NC_005264.1 + 8975 0.67 0.802552
Target:  5'- cGCCuaucacgAGGGAUACaacCGCGCCGCCGUaGAg -3'
miRNA:   3'- -CGG-------UCUUUGUGc--GCGUGGCGGCGcCU- -5'
24571 5' -58.3 NC_005264.1 + 10092 0.7 0.601458
Target:  5'- cGCCGGggGCAuCGCG-GCCGUguccgugaCGUGGAg -3'
miRNA:   3'- -CGGUCuuUGU-GCGCgUGGCG--------GCGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.