Results 1 - 20 of 303 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24571 | 5' | -58.3 | NC_005264.1 | + | 29795 | 1.11 | 0.001561 |
Target: 5'- aGCCAGAAACACGCGCACCGCCGCGGAa -3' miRNA: 3'- -CGGUCUUUGUGCGCGUGGCGGCGCCU- -5' |
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24571 | 5' | -58.3 | NC_005264.1 | + | 34263 | 0.73 | 0.44892 |
Target: 5'- cGCgCGGuaaucCGCGUGCugcgcuCCGCCGCGGAa -3' miRNA: 3'- -CG-GUCuuu--GUGCGCGu-----GGCGGCGCCU- -5' |
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24571 | 5' | -58.3 | NC_005264.1 | + | 138194 | 0.73 | 0.475167 |
Target: 5'- gGCCAGAAccguggggauuaaGCAUGCGCugCGCgGUGa- -3' miRNA: 3'- -CGGUCUU-------------UGUGCGCGugGCGgCGCcu -5' |
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24571 | 5' | -58.3 | NC_005264.1 | + | 127408 | 0.66 | 0.860133 |
Target: 5'- cGCCGGAcGCgGCGCGUugaaGCUGcCGGAg -3' miRNA: 3'- -CGGUCUuUG-UGCGCGugg-CGGC-GCCU- -5' |
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24571 | 5' | -58.3 | NC_005264.1 | + | 122615 | 0.8 | 0.17784 |
Target: 5'- cGCCAGGAG-GCGCGaagaauUACCGCCGCGGGg -3' miRNA: 3'- -CGGUCUUUgUGCGC------GUGGCGGCGCCU- -5' |
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24571 | 5' | -58.3 | NC_005264.1 | + | 97424 | 0.79 | 0.210846 |
Target: 5'- cGgCAGuGAGCgcuGCGgGCGCCGCCGCGGAu -3' miRNA: 3'- -CgGUC-UUUG---UGCgCGUGGCGGCGCCU- -5' |
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24571 | 5' | -58.3 | NC_005264.1 | + | 158514 | 0.77 | 0.29267 |
Target: 5'- cGCCAGggGCAgGCcuGCGCUGUgGUGGAc -3' miRNA: 3'- -CGGUCuuUGUgCG--CGUGGCGgCGCCU- -5' |
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24571 | 5' | -58.3 | NC_005264.1 | + | 136466 | 0.76 | 0.299377 |
Target: 5'- cGCuCAGAGACGgcgcCGCGCAgcCUGCCGCGGc -3' miRNA: 3'- -CG-GUCUUUGU----GCGCGU--GGCGGCGCCu -5' |
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24571 | 5' | -58.3 | NC_005264.1 | + | 77972 | 0.74 | 0.380952 |
Target: 5'- uGCCGGcgcCGCGCGUACCGgaGCGGGc -3' miRNA: 3'- -CGGUCuuuGUGCGCGUGGCggCGCCU- -5' |
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24571 | 5' | -58.3 | NC_005264.1 | + | 17080 | 0.73 | 0.440057 |
Target: 5'- uGUUAGGAcgaAUGCGCACCGCCGCa-- -3' miRNA: 3'- -CGGUCUUug-UGCGCGUGGCGGCGccu -5' |
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24571 | 5' | -58.3 | NC_005264.1 | + | 29446 | 0.74 | 0.405632 |
Target: 5'- gGCCAccAACGgGCuGCGCCGCCGCGa- -3' miRNA: 3'- -CGGUcuUUGUgCG-CGUGGCGGCGCcu -5' |
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24571 | 5' | -58.3 | NC_005264.1 | + | 34992 | 0.76 | 0.327389 |
Target: 5'- cGCCGGGuucuaGAC-CGCcgGCCGCCGCGGAg -3' miRNA: 3'- -CGGUCU-----UUGuGCGcgUGGCGGCGCCU- -5' |
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24571 | 5' | -58.3 | NC_005264.1 | + | 37549 | 0.86 | 0.069219 |
Target: 5'- cGUCAGGcgaAGCGacaGCGCGCCGCCGCGGAg -3' miRNA: 3'- -CGGUCU---UUGUg--CGCGUGGCGGCGCCU- -5' |
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24571 | 5' | -58.3 | NC_005264.1 | + | 7920 | 0.74 | 0.408997 |
Target: 5'- gGCUAGcAACGCGCGCguccacgcgucguccACgGCCGCGGc -3' miRNA: 3'- -CGGUCuUUGUGCGCG---------------UGgCGGCGCCu -5' |
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24571 | 5' | -58.3 | NC_005264.1 | + | 64507 | 0.82 | 0.131845 |
Target: 5'- cGCCuGGAcCGCGCuguucuguccGCGCCGCCGCGGAg -3' miRNA: 3'- -CGGuCUUuGUGCG----------CGUGGCGGCGCCU- -5' |
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24571 | 5' | -58.3 | NC_005264.1 | + | 19094 | 0.76 | 0.327389 |
Target: 5'- aGCCAGGAcuGCAC-CGCGgCGgCGCGGAg -3' miRNA: 3'- -CGGUCUU--UGUGcGCGUgGCgGCGCCU- -5' |
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24571 | 5' | -58.3 | NC_005264.1 | + | 3290 | 0.73 | 0.431294 |
Target: 5'- cGCCAGAGucgugagcucgcGCGggauCGCGCGCCGUgcaaGCGGAg -3' miRNA: 3'- -CGGUCUU------------UGU----GCGCGUGGCGg---CGCCU- -5' |
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24571 | 5' | -58.3 | NC_005264.1 | + | 158217 | 0.73 | 0.466938 |
Target: 5'- cCCGGcgauuuucgaGAACGCGCcuaCGCCGCCGCGGc -3' miRNA: 3'- cGGUC----------UUUGUGCGc--GUGGCGGCGCCu -5' |
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24571 | 5' | -58.3 | NC_005264.1 | + | 20523 | 0.8 | 0.173517 |
Target: 5'- aGCCAGggGCACGCGUugCGCC-CGu- -3' miRNA: 3'- -CGGUCuuUGUGCGCGugGCGGcGCcu -5' |
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24571 | 5' | -58.3 | NC_005264.1 | + | 62810 | 0.77 | 0.286082 |
Target: 5'- aCCGGAcGCA-GCaGCGCCGCCGCGGc -3' miRNA: 3'- cGGUCUuUGUgCG-CGUGGCGGCGCCu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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