miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24572 3' -56.4 NC_005264.1 + 121637 0.65 0.909574
Target:  5'- gGACGUGuccgcGGccUCCGCuuucuuccuaggcaGGCCGGCGcCGGg -3'
miRNA:   3'- -UUGUAU-----CCaaAGGCG--------------CCGGUCGC-GCC- -5'
24572 3' -56.4 NC_005264.1 + 160416 0.65 0.909574
Target:  5'- gGACGUGuccgcGGccUCCGCuuucuuccuaggcaGGCCGGCGcCGGg -3'
miRNA:   3'- -UUGUAU-----CCaaAGGCG--------------CCGGUCGC-GCC- -5'
24572 3' -56.4 NC_005264.1 + 64731 0.66 0.907753
Target:  5'- aGAUGUccGUUaucgcggaaccccccUCCGCGG-CGGCGCGGa -3'
miRNA:   3'- -UUGUAucCAA---------------AGGCGCCgGUCGCGCC- -5'
24572 3' -56.4 NC_005264.1 + 114947 0.66 0.905293
Target:  5'- -uCAUAGcGcaauacUCGCGGCC-GCGCGGg -3'
miRNA:   3'- uuGUAUC-Caaa---GGCGCCGGuCGCGCC- -5'
24572 3' -56.4 NC_005264.1 + 50492 0.66 0.905293
Target:  5'- gGACGUGGccacggCCGCGGCCAGUucuGCc- -3'
miRNA:   3'- -UUGUAUCcaaa--GGCGCCGGUCG---CGcc -5'
24572 3' -56.4 NC_005264.1 + 5133 0.66 0.898981
Target:  5'- cAugAUAGGUUcucgaUgCGCGGCC-GCGCc- -3'
miRNA:   3'- -UugUAUCCAA-----AgGCGCCGGuCGCGcc -5'
24572 3' -56.4 NC_005264.1 + 30415 0.66 0.892437
Target:  5'- gAGCGUAGcGUUguacagCCGCGGCUuguAGCucgugccuGCGGc -3'
miRNA:   3'- -UUGUAUC-CAAa-----GGCGCCGG---UCG--------CGCC- -5'
24572 3' -56.4 NC_005264.1 + 89334 0.66 0.888402
Target:  5'- gGGCAaaauGGUUUucccuggcgccaguaCCGaCGGCCuuGCGCGGg -3'
miRNA:   3'- -UUGUau--CCAAA---------------GGC-GCCGGu-CGCGCC- -5'
24572 3' -56.4 NC_005264.1 + 63834 0.66 0.888402
Target:  5'- aGACGUGGGguccucgcaggccUCCGCGGCCGcuucucuCGCGa -3'
miRNA:   3'- -UUGUAUCCaa-----------AGGCGCCGGUc------GCGCc -5'
24572 3' -56.4 NC_005264.1 + 19661 0.66 0.885667
Target:  5'- cGCAUAGc-UUCCGCguGGCaucugaaAGCGCGGc -3'
miRNA:   3'- uUGUAUCcaAAGGCG--CCGg------UCGCGCC- -5'
24572 3' -56.4 NC_005264.1 + 29068 0.66 0.885667
Target:  5'- uGGCcgGGGUcUUCGCGGUgGcguucgccGCGCGGu -3'
miRNA:   3'- -UUGuaUCCAaAGGCGCCGgU--------CGCGCC- -5'
24572 3' -56.4 NC_005264.1 + 94669 0.66 0.885667
Target:  5'- aAACGUAG----CCGCGGCgGGCGCc- -3'
miRNA:   3'- -UUGUAUCcaaaGGCGCCGgUCGCGcc -5'
24572 3' -56.4 NC_005264.1 + 34469 0.66 0.878673
Target:  5'- cACGUAuaUUUCCGCGGCggagcgCAGCacGCGGa -3'
miRNA:   3'- uUGUAUccAAAGGCGCCG------GUCG--CGCC- -5'
24572 3' -56.4 NC_005264.1 + 95348 0.66 0.878673
Target:  5'- aGGCaAUGGGg--CCGaCGGgCGGCGCGu -3'
miRNA:   3'- -UUG-UAUCCaaaGGC-GCCgGUCGCGCc -5'
24572 3' -56.4 NC_005264.1 + 54559 0.66 0.878673
Target:  5'- cGCGcGGGgaUCCgGUGGCC-GCGCGa -3'
miRNA:   3'- uUGUaUCCaaAGG-CGCCGGuCGCGCc -5'
24572 3' -56.4 NC_005264.1 + 47296 0.67 0.87146
Target:  5'- cAugGUAGGggg-CGCGGCgAGCGCu- -3'
miRNA:   3'- -UugUAUCCaaagGCGCCGgUCGCGcc -5'
24572 3' -56.4 NC_005264.1 + 122452 0.67 0.864034
Target:  5'- gGACGUAGGg--CCGCG-CCcGCGCu- -3'
miRNA:   3'- -UUGUAUCCaaaGGCGCcGGuCGCGcc -5'
24572 3' -56.4 NC_005264.1 + 159601 0.67 0.864034
Target:  5'- gGACGUAGGg--CCGCG-CCcGCGCu- -3'
miRNA:   3'- -UUGUAUCCaaaGGCGCcGGuCGCGcc -5'
24572 3' -56.4 NC_005264.1 + 113232 0.67 0.864034
Target:  5'- cGCGUAagaucgCCGCGGcCCAGuCGCGGc -3'
miRNA:   3'- uUGUAUccaaa-GGCGCC-GGUC-GCGCC- -5'
24572 3' -56.4 NC_005264.1 + 17340 0.67 0.864034
Target:  5'- gGACGUcugcAGuGccUUCCGCGGCagcuggcggCGGCGCGGu -3'
miRNA:   3'- -UUGUA----UC-Ca-AAGGCGCCG---------GUCGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.