miRNA display CGI


Results 1 - 20 of 67 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24572 3' -56.4 NC_005264.1 + 30222 1.07 0.003652
Target:  5'- uAACAUAGGUUUCCGCGGCCAGCGCGGc -3'
miRNA:   3'- -UUGUAUCCAAAGGCGCCGGUCGCGCC- -5'
24572 3' -56.4 NC_005264.1 + 107423 0.78 0.300161
Target:  5'- gAACAUGGGaaagCCGCGGCUGGCGCc- -3'
miRNA:   3'- -UUGUAUCCaaa-GGCGCCGGUCGCGcc -5'
24572 3' -56.4 NC_005264.1 + 17919 0.75 0.426775
Target:  5'- uGGCAUAGGUUgcgCCGCGGC--GCGCaGGu -3'
miRNA:   3'- -UUGUAUCCAAa--GGCGCCGguCGCG-CC- -5'
24572 3' -56.4 NC_005264.1 + 5094 0.74 0.463039
Target:  5'- uAAguUAGGga-CgGCGGCCAGCGUGGc -3'
miRNA:   3'- -UUguAUCCaaaGgCGCCGGUCGCGCC- -5'
24572 3' -56.4 NC_005264.1 + 120222 0.74 0.472356
Target:  5'- cAGCGgaccGGGcgUCCGCGGCCAugGCuGCGGg -3'
miRNA:   3'- -UUGUa---UCCaaAGGCGCCGGU--CG-CGCC- -5'
24572 3' -56.4 NC_005264.1 + 161831 0.74 0.472356
Target:  5'- cAGCGgaccGGGcgUCCGCGGCCAugGCuGCGGg -3'
miRNA:   3'- -UUGUa---UCCaaAGGCGCCGGU--CG-CGCC- -5'
24572 3' -56.4 NC_005264.1 + 6726 0.74 0.481766
Target:  5'- uAGCGUcgcGGUacUCCGCGGCgUGGCGCGGg -3'
miRNA:   3'- -UUGUAu--CCAa-AGGCGCCG-GUCGCGCC- -5'
24572 3' -56.4 NC_005264.1 + 147629 0.74 0.491267
Target:  5'- uAGCuugAGGUUgggUCGCGGCCGGCGUa- -3'
miRNA:   3'- -UUGua-UCCAAa--GGCGCCGGUCGCGcc -5'
24572 3' -56.4 NC_005264.1 + 19085 0.73 0.497969
Target:  5'- cGCAUAGGgagccaggacugcaCCGCGG-CGGCGCGGa -3'
miRNA:   3'- uUGUAUCCaaa-----------GGCGCCgGUCGCGCC- -5'
24572 3' -56.4 NC_005264.1 + 66200 0.73 0.510522
Target:  5'- cGGCGggcGGUgcgccUCCGCGGCCAGCGaaGGa -3'
miRNA:   3'- -UUGUau-CCAa----AGGCGCCGGUCGCg-CC- -5'
24572 3' -56.4 NC_005264.1 + 83621 0.71 0.651368
Target:  5'- gGGCGUGGcGaggCCGCGGCggaaccCAGCGUGGg -3'
miRNA:   3'- -UUGUAUC-CaaaGGCGCCG------GUCGCGCC- -5'
24572 3' -56.4 NC_005264.1 + 5788 0.7 0.671723
Target:  5'- cGCGUGGGUcUUCGUGGCggcccuCGGCGCGu -3'
miRNA:   3'- uUGUAUCCAaAGGCGCCG------GUCGCGCc -5'
24572 3' -56.4 NC_005264.1 + 157826 0.7 0.691949
Target:  5'- uGACGUAc---UCCGCGGCgacccCGGCGCGGa -3'
miRNA:   3'- -UUGUAUccaaAGGCGCCG-----GUCGCGCC- -5'
24572 3' -56.4 NC_005264.1 + 124226 0.7 0.691949
Target:  5'- uGACGUAc---UCCGCGGCgacccCGGCGCGGa -3'
miRNA:   3'- -UUGUAUccaaAGGCGCCG-----GUCGCGCC- -5'
24572 3' -56.4 NC_005264.1 + 153890 0.7 0.691949
Target:  5'- cGAUAUucGUUUCCGCGaGCCAuUGCGGu -3'
miRNA:   3'- -UUGUAucCAAAGGCGC-CGGUcGCGCC- -5'
24572 3' -56.4 NC_005264.1 + 128162 0.7 0.691949
Target:  5'- cGAUAUucGUUUCCGCGaGCCAuUGCGGu -3'
miRNA:   3'- -UUGUAucCAAAGGCGC-CGGUcGCGCC- -5'
24572 3' -56.4 NC_005264.1 + 60205 0.7 0.701992
Target:  5'- gGGCGUAGagaaGUUcuugggCCGCGGCCA-CGCGGc -3'
miRNA:   3'- -UUGUAUC----CAAa-----GGCGCCGGUcGCGCC- -5'
24572 3' -56.4 NC_005264.1 + 41044 0.7 0.701992
Target:  5'- cGCAagcGGGUUUCUgcgcuagaucgGCGGCCGGCcauaGCGGg -3'
miRNA:   3'- uUGUa--UCCAAAGG-----------CGCCGGUCG----CGCC- -5'
24572 3' -56.4 NC_005264.1 + 65742 0.7 0.711976
Target:  5'- cGAUGUGuGGUccgCCGuCGGCCGGCGCa- -3'
miRNA:   3'- -UUGUAU-CCAaa-GGC-GCCGGUCGCGcc -5'
24572 3' -56.4 NC_005264.1 + 114631 0.7 0.711976
Target:  5'- gGGCGUcGGg--CgGCGGCCAGgaGCGGg -3'
miRNA:   3'- -UUGUAuCCaaaGgCGCCGGUCg-CGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.