miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24572 3' -56.4 NC_005264.1 + 3676 0.69 0.760701
Target:  5'- uGGCAUuGGUg--CGgGGCCuGGCGCGGa -3'
miRNA:   3'- -UUGUAuCCAaagGCgCCGG-UCGCGCC- -5'
24572 3' -56.4 NC_005264.1 + 5094 0.74 0.463039
Target:  5'- uAAguUAGGga-CgGCGGCCAGCGUGGc -3'
miRNA:   3'- -UUguAUCCaaaGgCGCCGGUCGCGCC- -5'
24572 3' -56.4 NC_005264.1 + 5133 0.66 0.898981
Target:  5'- cAugAUAGGUUcucgaUgCGCGGCC-GCGCc- -3'
miRNA:   3'- -UugUAUCCAA-----AgGCGCCGGuCGCGcc -5'
24572 3' -56.4 NC_005264.1 + 5788 0.7 0.671723
Target:  5'- cGCGUGGGUcUUCGUGGCggcccuCGGCGCGu -3'
miRNA:   3'- uUGUAUCCAaAGGCGCCG------GUCGCGCc -5'
24572 3' -56.4 NC_005264.1 + 6726 0.74 0.481766
Target:  5'- uAGCGUcgcGGUacUCCGCGGCgUGGCGCGGg -3'
miRNA:   3'- -UUGUAu--CCAa-AGGCGCCG-GUCGCGCC- -5'
24572 3' -56.4 NC_005264.1 + 17340 0.67 0.864034
Target:  5'- gGACGUcugcAGuGccUUCCGCGGCagcuggcggCGGCGCGGu -3'
miRNA:   3'- -UUGUA----UC-Ca-AAGGCGCCG---------GUCGCGCC- -5'
24572 3' -56.4 NC_005264.1 + 17919 0.75 0.426775
Target:  5'- uGGCAUAGGUUgcgCCGCGGC--GCGCaGGu -3'
miRNA:   3'- -UUGUAUCCAAa--GGCGCCGguCGCG-CC- -5'
24572 3' -56.4 NC_005264.1 + 18053 0.69 0.760701
Target:  5'- aAGCGgcGGcg-CCGCGaGCCAgggcGCGCGGg -3'
miRNA:   3'- -UUGUauCCaaaGGCGC-CGGU----CGCGCC- -5'
24572 3' -56.4 NC_005264.1 + 19085 0.73 0.497969
Target:  5'- cGCAUAGGgagccaggacugcaCCGCGG-CGGCGCGGa -3'
miRNA:   3'- uUGUAUCCaaa-----------GGCGCCgGUCGCGCC- -5'
24572 3' -56.4 NC_005264.1 + 19425 0.67 0.832311
Target:  5'- aGGCGccGGGUguggCCGCGG--GGCGCGGg -3'
miRNA:   3'- -UUGUa-UCCAaa--GGCGCCggUCGCGCC- -5'
24572 3' -56.4 NC_005264.1 + 19661 0.66 0.885667
Target:  5'- cGCAUAGc-UUCCGCguGGCaucugaaAGCGCGGc -3'
miRNA:   3'- uUGUAUCcaAAGGCG--CCGg------UCGCGCC- -5'
24572 3' -56.4 NC_005264.1 + 20251 0.69 0.751146
Target:  5'- gGGCAgGGGUUgcggCGCGGCCu-CGCGGa -3'
miRNA:   3'- -UUGUaUCCAAag--GCGCCGGucGCGCC- -5'
24572 3' -56.4 NC_005264.1 + 29068 0.66 0.885667
Target:  5'- uGGCcgGGGUcUUCGCGGUgGcguucgccGCGCGGu -3'
miRNA:   3'- -UUGuaUCCAaAGGCGCCGgU--------CGCGCC- -5'
24572 3' -56.4 NC_005264.1 + 30222 1.07 0.003652
Target:  5'- uAACAUAGGUUUCCGCGGCCAGCGCGGc -3'
miRNA:   3'- -UUGUAUCCAAAGGCGCCGGUCGCGCC- -5'
24572 3' -56.4 NC_005264.1 + 30415 0.66 0.892437
Target:  5'- gAGCGUAGcGUUguacagCCGCGGCUuguAGCucgugccuGCGGc -3'
miRNA:   3'- -UUGUAUC-CAAa-----GGCGCCGG---UCG--------CGCC- -5'
24572 3' -56.4 NC_005264.1 + 34469 0.66 0.878673
Target:  5'- cACGUAuaUUUCCGCGGCggagcgCAGCacGCGGa -3'
miRNA:   3'- uUGUAUccAAAGGCGCCG------GUCG--CGCC- -5'
24572 3' -56.4 NC_005264.1 + 41044 0.7 0.701992
Target:  5'- cGCAagcGGGUUUCUgcgcuagaucgGCGGCCGGCcauaGCGGg -3'
miRNA:   3'- uUGUa--UCCAAAGG-----------CGCCGGUCG----CGCC- -5'
24572 3' -56.4 NC_005264.1 + 46444 0.67 0.832311
Target:  5'- cGACGUcGGc--CUGCGGCUuuuGCGCGGc -3'
miRNA:   3'- -UUGUAuCCaaaGGCGCCGGu--CGCGCC- -5'
24572 3' -56.4 NC_005264.1 + 47296 0.67 0.87146
Target:  5'- cAugGUAGGggg-CGCGGCgAGCGCu- -3'
miRNA:   3'- -UugUAUCCaaagGCGCCGgUCGCGcc -5'
24572 3' -56.4 NC_005264.1 + 50460 0.7 0.721893
Target:  5'- gGGCGUuGGUgaucUCCGCGGCCAugGCGUc- -3'
miRNA:   3'- -UUGUAuCCAa---AGGCGCCGGU--CGCGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.