miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24572 3' -56.4 NC_005264.1 + 30222 1.07 0.003652
Target:  5'- uAACAUAGGUUUCCGCGGCCAGCGCGGc -3'
miRNA:   3'- -UUGUAUCCAAAGGCGCCGGUCGCGCC- -5'
24572 3' -56.4 NC_005264.1 + 91886 0.68 0.797695
Target:  5'- uAGCGggguGGUUggCCGCGGCagcgaugggcgGGCGCGGc -3'
miRNA:   3'- -UUGUau--CCAAa-GGCGCCGg----------UCGCGCC- -5'
24572 3' -56.4 NC_005264.1 + 161285 0.68 0.815335
Target:  5'- cGGCcgGGGc--CCGCcuauuGCCGGCGCGGu -3'
miRNA:   3'- -UUGuaUCCaaaGGCGc----CGGUCGCGCC- -5'
24572 3' -56.4 NC_005264.1 + 160416 0.65 0.909574
Target:  5'- gGACGUGuccgcGGccUCCGCuuucuuccuaggcaGGCCGGCGcCGGg -3'
miRNA:   3'- -UUGUAU-----CCaaAGGCG--------------CCGGUCGC-GCC- -5'
24572 3' -56.4 NC_005264.1 + 66200 0.73 0.510522
Target:  5'- cGGCGggcGGUgcgccUCCGCGGCCAGCGaaGGa -3'
miRNA:   3'- -UUGUau-CCAa----AGGCGCCGGUCGCg-CC- -5'
24572 3' -56.4 NC_005264.1 + 157826 0.7 0.691949
Target:  5'- uGACGUAc---UCCGCGGCgacccCGGCGCGGa -3'
miRNA:   3'- -UUGUAUccaaAGGCGCCG-----GUCGCGCC- -5'
24572 3' -56.4 NC_005264.1 + 65742 0.7 0.711976
Target:  5'- cGAUGUGuGGUccgCCGuCGGCCGGCGCa- -3'
miRNA:   3'- -UUGUAU-CCAaa-GGC-GCCGGUCGCGcc -5'
24572 3' -56.4 NC_005264.1 + 149422 0.7 0.721893
Target:  5'- cGGCGgcGGcggUCGCGcGCCGGUGCGGa -3'
miRNA:   3'- -UUGUauCCaaaGGCGC-CGGUCGCGCC- -5'
24572 3' -56.4 NC_005264.1 + 88098 0.69 0.741487
Target:  5'- cGCGUcGGgcacagCGuCGGCCGGCGCGGu -3'
miRNA:   3'- uUGUAuCCaaag--GC-GCCGGUCGCGCC- -5'
24572 3' -56.4 NC_005264.1 + 18053 0.69 0.760701
Target:  5'- aAGCGgcGGcg-CCGCGaGCCAgggcGCGCGGg -3'
miRNA:   3'- -UUGUauCCaaaGGCGC-CGGU----CGCGCC- -5'
24572 3' -56.4 NC_005264.1 + 67366 0.69 0.751146
Target:  5'- aAACGUAGcgc-CCGCGcucgcugcgcccGCCGGCGCGGu -3'
miRNA:   3'- -UUGUAUCcaaaGGCGC------------CGGUCGCGCC- -5'
24572 3' -56.4 NC_005264.1 + 94593 0.69 0.741487
Target:  5'- uGGCAUcgAGGaagacaagcCCGCcGCCGGCGCGGa -3'
miRNA:   3'- -UUGUA--UCCaaa------GGCGcCGGUCGCGCC- -5'
24572 3' -56.4 NC_005264.1 + 120222 0.74 0.472356
Target:  5'- cAGCGgaccGGGcgUCCGCGGCCAugGCuGCGGg -3'
miRNA:   3'- -UUGUa---UCCaaAGGCGCCGGU--CG-CGCC- -5'
24572 3' -56.4 NC_005264.1 + 154793 0.69 0.751146
Target:  5'- cGACGUGGGUgaagagGCGGagGGCGCGGu -3'
miRNA:   3'- -UUGUAUCCAaagg--CGCCggUCGCGCC- -5'
24572 3' -56.4 NC_005264.1 + 6726 0.74 0.481766
Target:  5'- uAGCGUcgcGGUacUCCGCGGCgUGGCGCGGg -3'
miRNA:   3'- -UUGUAu--CCAa-AGGCGCCG-GUCGCGCC- -5'
24572 3' -56.4 NC_005264.1 + 118036 0.7 0.721893
Target:  5'- aAAUggAGGUUUgCCGCGGCgAcCGCGGc -3'
miRNA:   3'- -UUGuaUCCAAA-GGCGCCGgUcGCGCC- -5'
24572 3' -56.4 NC_005264.1 + 3676 0.69 0.760701
Target:  5'- uGGCAUuGGUg--CGgGGCCuGGCGCGGa -3'
miRNA:   3'- -UUGUAuCCAaagGCgCCGG-UCGCGCC- -5'
24572 3' -56.4 NC_005264.1 + 156994 0.68 0.797695
Target:  5'- --gAUAGGgcgauaaCCGCGGCCAG-GCGa -3'
miRNA:   3'- uugUAUCCaaa----GGCGCCGGUCgCGCc -5'
24572 3' -56.4 NC_005264.1 + 19085 0.73 0.497969
Target:  5'- cGCAUAGGgagccaggacugcaCCGCGG-CGGCGCGGa -3'
miRNA:   3'- uUGUAUCCaaa-----------GGCGCCgGUCGCGCC- -5'
24572 3' -56.4 NC_005264.1 + 153890 0.7 0.691949
Target:  5'- cGAUAUucGUUUCCGCGaGCCAuUGCGGu -3'
miRNA:   3'- -UUGUAucCAAAGGCGC-CGGUcGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.