miRNA display CGI


Results 1 - 16 of 16 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24573 3' -48.3 NC_005264.1 + 52291 0.66 0.999667
Target:  5'- cUCACGcgcuAUGUCUgacGUCGCCcucaAGCg -3'
miRNA:   3'- cAGUGC----UACAGAaaaCAGCGGca--UCG- -5'
24573 3' -48.3 NC_005264.1 + 137721 0.67 0.999197
Target:  5'- -cCGCGAagcgGUCUUccucgaaGUCGUCGUAGUu -3'
miRNA:   3'- caGUGCUa---CAGAAaa-----CAGCGGCAUCG- -5'
24573 3' -48.3 NC_005264.1 + 76322 0.67 0.999015
Target:  5'- -gCGCGcgGUCUUU-GcCGCCGUccGCg -3'
miRNA:   3'- caGUGCuaCAGAAAaCaGCGGCAu-CG- -5'
24573 3' -48.3 NC_005264.1 + 116855 0.67 0.999015
Target:  5'- uUCGUGGUGUCUaggcUGaUCGCCG-AGCa -3'
miRNA:   3'- cAGUGCUACAGAaa--AC-AGCGGCaUCG- -5'
24573 3' -48.3 NC_005264.1 + 56809 0.67 0.998798
Target:  5'- aUCGcCGGUGUCg---GUCGgCGgcGCa -3'
miRNA:   3'- cAGU-GCUACAGaaaaCAGCgGCauCG- -5'
24573 3' -48.3 NC_005264.1 + 37200 0.67 0.998798
Target:  5'- -cCugGAcGUaCUgUUGUUGCUGUGGCc -3'
miRNA:   3'- caGugCUaCA-GAaAACAGCGGCAUCG- -5'
24573 3' -48.3 NC_005264.1 + 94261 0.68 0.997482
Target:  5'- aGUCACGcgGgaca-UGUUGCCGgcGCc -3'
miRNA:   3'- -CAGUGCuaCagaaaACAGCGGCauCG- -5'
24573 3' -48.3 NC_005264.1 + 86150 0.68 0.997393
Target:  5'- cGUCACGGUGggCgacagccugGUgGCCGUGGa -3'
miRNA:   3'- -CAGUGCUACa-Gaaaa-----CAgCGGCAUCg -5'
24573 3' -48.3 NC_005264.1 + 78697 0.69 0.994335
Target:  5'- aUCGCGAUgGUCg--UGcuaacgGCCGUAGCg -3'
miRNA:   3'- cAGUGCUA-CAGaaaACag----CGGCAUCG- -5'
24573 3' -48.3 NC_005264.1 + 156953 0.7 0.987014
Target:  5'- -gCAgGuagGUCUUUUGgcucgCGUCGUAGCg -3'
miRNA:   3'- caGUgCua-CAGAAAACa----GCGGCAUCG- -5'
24573 3' -48.3 NC_005264.1 + 125100 0.7 0.987014
Target:  5'- -gCAgGuagGUCUUUUGgcucgCGUCGUAGCg -3'
miRNA:   3'- caGUgCua-CAGAAAACa----GCGGCAUCG- -5'
24573 3' -48.3 NC_005264.1 + 141894 0.71 0.983196
Target:  5'- aUCACGAuacgcggcgguucUGUagcaugGUCGCCGUAGUc -3'
miRNA:   3'- cAGUGCU-------------ACAgaaaa-CAGCGGCAUCG- -5'
24573 3' -48.3 NC_005264.1 + 162585 0.72 0.963599
Target:  5'- uUCugGAUGUCgagcggcccgccUCGCUGUGGCg -3'
miRNA:   3'- cAGugCUACAGaaaac-------AGCGGCAUCG- -5'
24573 3' -48.3 NC_005264.1 + 119468 0.72 0.963599
Target:  5'- uUCugGAUGUCgagcggcccgccUCGCUGUGGCg -3'
miRNA:   3'- cAGugCUACAGaaaac-------AGCGGCAUCG- -5'
24573 3' -48.3 NC_005264.1 + 56239 0.77 0.828122
Target:  5'- cGUCGCGcgG-CUUUUGUCGagGUGGCg -3'
miRNA:   3'- -CAGUGCuaCaGAAAACAGCggCAUCG- -5'
24573 3' -48.3 NC_005264.1 + 31086 1.14 0.008493
Target:  5'- cGUCACGAUGUCUUUUGUCGCCGUAGCg -3'
miRNA:   3'- -CAGUGCUACAGAAAACAGCGGCAUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.