miRNA display CGI


Results 1 - 20 of 528 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24573 5' -61 NC_005264.1 + 96834 0.66 0.743119
Target:  5'- aCGCCGCGcGCgacgguuuugaacuuGCCgcacaaccagAGCcACGCCGCGu -3'
miRNA:   3'- cGCGGUGCuCG---------------CGG----------UCGuUGCGGCGC- -5'
24573 5' -61 NC_005264.1 + 11295 0.66 0.739379
Target:  5'- cGCGCCAggguaGGGCGUCc---ACGCCGCc -3'
miRNA:   3'- -CGCGGUg----CUCGCGGucguUGCGGCGc -5'
24573 5' -61 NC_005264.1 + 25713 0.66 0.739379
Target:  5'- uUGgCGCGGGCGgCAGCggUGCguacucgguCGCGg -3'
miRNA:   3'- cGCgGUGCUCGCgGUCGuuGCG---------GCGC- -5'
24573 5' -61 NC_005264.1 + 62633 0.66 0.739379
Target:  5'- uGCGCCccGCgGAGC-UCAGCGAaGUCGCGc -3'
miRNA:   3'- -CGCGG--UG-CUCGcGGUCGUUgCGGCGC- -5'
24573 5' -61 NC_005264.1 + 131960 0.66 0.739379
Target:  5'- cGCGUCcccgauCGAGaCGCCguugccuaccgGGCGgcGCGCCGCc -3'
miRNA:   3'- -CGCGGu-----GCUC-GCGG-----------UCGU--UGCGGCGc -5'
24573 5' -61 NC_005264.1 + 157417 0.66 0.739379
Target:  5'- -aGCgGCGA-CGCCgAGacaGAUGCCGCGu -3'
miRNA:   3'- cgCGgUGCUcGCGG-UCg--UUGCGGCGC- -5'
24573 5' -61 NC_005264.1 + 75319 0.66 0.739379
Target:  5'- -gGCCGCGGGCGgCucaucgaucGCGGaGCCGCa -3'
miRNA:   3'- cgCGGUGCUCGCgGu--------CGUUgCGGCGc -5'
24573 5' -61 NC_005264.1 + 125865 0.66 0.739379
Target:  5'- gGCGaCUAUG-GCGCCAGC-GCGCaaccucugucgUGCGg -3'
miRNA:   3'- -CGC-GGUGCuCGCGGUCGuUGCG-----------GCGC- -5'
24573 5' -61 NC_005264.1 + 68018 0.66 0.739379
Target:  5'- -aGCCGCgGAGCGCCaaagAGCGGauaaCCGCu -3'
miRNA:   3'- cgCGGUG-CUCGCGG----UCGUUgc--GGCGc -5'
24573 5' -61 NC_005264.1 + 140857 0.66 0.739379
Target:  5'- -gGCgACGAcaGCCGGCGGCccuaccaauGCCGCGa -3'
miRNA:   3'- cgCGgUGCUcgCGGUCGUUG---------CGGCGC- -5'
24573 5' -61 NC_005264.1 + 29634 0.66 0.739379
Target:  5'- gGCGCggacgaACGAG-GCCcGCAGucggucCGCCGCGu -3'
miRNA:   3'- -CGCGg-----UGCUCgCGGuCGUU------GCGGCGC- -5'
24573 5' -61 NC_005264.1 + 38390 0.66 0.739379
Target:  5'- -aGCgGCGA-CGCCgAGacaGAUGCCGCGu -3'
miRNA:   3'- cgCGgUGCUcGCGG-UCg--UUGCGGCGC- -5'
24573 5' -61 NC_005264.1 + 55521 0.66 0.739379
Target:  5'- cCGCCGCGAGCGaCAac-GCGCaCGUGa -3'
miRNA:   3'- cGCGGUGCUCGCgGUcguUGCG-GCGC- -5'
24573 5' -61 NC_005264.1 + 14081 0.66 0.739379
Target:  5'- cGCGCCcCGu-CGCCugcaGGCGACGaCGCGu -3'
miRNA:   3'- -CGCGGuGCucGCGG----UCGUUGCgGCGC- -5'
24573 5' -61 NC_005264.1 + 37000 0.66 0.739379
Target:  5'- uCGCCGCGccuCGCCu---GCGCCGCa -3'
miRNA:   3'- cGCGGUGCuc-GCGGucguUGCGGCGc -5'
24573 5' -61 NC_005264.1 + 92466 0.66 0.739379
Target:  5'- cCGCCACuGGGUGCauuguaGGCA--GCCGUGa -3'
miRNA:   3'- cGCGGUG-CUCGCGg-----UCGUugCGGCGC- -5'
24573 5' -61 NC_005264.1 + 93972 0.66 0.739379
Target:  5'- -gGCCGCGGcCGCCgGGCAGgucaucguCGUCGCGc -3'
miRNA:   3'- cgCGGUGCUcGCGG-UCGUU--------GCGGCGC- -5'
24573 5' -61 NC_005264.1 + 56025 0.66 0.739379
Target:  5'- -aGCCcUGAGgcccaGUCAGCcGCGCCGCc -3'
miRNA:   3'- cgCGGuGCUCg----CGGUCGuUGCGGCGc -5'
24573 5' -61 NC_005264.1 + 97907 0.66 0.739379
Target:  5'- -aGCUcuuGGCGCCuGGCGGCGCUGCu -3'
miRNA:   3'- cgCGGugcUCGCGG-UCGUUGCGGCGc -5'
24573 5' -61 NC_005264.1 + 6839 0.66 0.739379
Target:  5'- gGCGaCUAUG-GCGCCAGC-GCGCaaccucugucgUGCGg -3'
miRNA:   3'- -CGC-GGUGCuCGCGGUCGuUGCG-----------GCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.