miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24574 3' -61.5 NC_005264.1 + 8439 0.66 0.685896
Target:  5'- aCACCaGGGCGCCGcuGGccagacuaaCCGCGCugGc -3'
miRNA:   3'- -GUGGaUCCGCGGU--CCac-------GGCGCGugU- -5'
24574 3' -61.5 NC_005264.1 + 45449 0.66 0.685896
Target:  5'- aACCccuGGCGCCAGacaggGCCGCgaugaacuugGCGCAc -3'
miRNA:   3'- gUGGau-CCGCGGUCca---CGGCG----------CGUGU- -5'
24574 3' -61.5 NC_005264.1 + 150817 0.66 0.676059
Target:  5'- uCGCCUaaGGGCGgC-GGUcGCCGC-CGCAg -3'
miRNA:   3'- -GUGGA--UCCGCgGuCCA-CGGCGcGUGU- -5'
24574 3' -61.5 NC_005264.1 + 131235 0.66 0.676059
Target:  5'- uCGCCUaaGGGCGgC-GGUcGCCGC-CGCAg -3'
miRNA:   3'- -GUGGA--UCCGCgGuCCA-CGGCGcGUGU- -5'
24574 3' -61.5 NC_005264.1 + 93972 0.66 0.674087
Target:  5'- gGCCgcGGcCGCCGGGcaggucaucgucGUCGCGCACc -3'
miRNA:   3'- gUGGauCC-GCGGUCCa-----------CGGCGCGUGu -5'
24574 3' -61.5 NC_005264.1 + 51935 0.66 0.666187
Target:  5'- gCGCCgagcuuGGCGa-GGGUGCCGCuaACGc -3'
miRNA:   3'- -GUGGau----CCGCggUCCACGGCGcgUGU- -5'
24574 3' -61.5 NC_005264.1 + 50559 0.66 0.666187
Target:  5'- aAgCUAGGCGCgCGcGUGCgggaaGCGCACGc -3'
miRNA:   3'- gUgGAUCCGCG-GUcCACGg----CGCGUGU- -5'
24574 3' -61.5 NC_005264.1 + 58193 0.66 0.660251
Target:  5'- gGCCUGucCGCCGGGgccgcugagccacgGCCGCcGCGCGg -3'
miRNA:   3'- gUGGAUccGCGGUCCa-------------CGGCG-CGUGU- -5'
24574 3' -61.5 NC_005264.1 + 155876 0.66 0.656289
Target:  5'- aACgUGGucGCgGCCAGGUccauCCGCGCACGg -3'
miRNA:   3'- gUGgAUC--CG-CGGUCCAc---GGCGCGUGU- -5'
24574 3' -61.5 NC_005264.1 + 126177 0.66 0.656289
Target:  5'- aACgUGGucGCgGCCAGGUccauCCGCGCACGg -3'
miRNA:   3'- gUGgAUC--CG-CGGUCCAc---GGCGCGUGU- -5'
24574 3' -61.5 NC_005264.1 + 112490 0.66 0.636447
Target:  5'- gCACCgaaGGGCuGCCgcaggacaAGGUcgacGCCGCGUACu -3'
miRNA:   3'- -GUGGa--UCCG-CGG--------UCCA----CGGCGCGUGu -5'
24574 3' -61.5 NC_005264.1 + 112996 0.66 0.636447
Target:  5'- uCACCaGGGC-CCcGGUGCCGUGUu-- -3'
miRNA:   3'- -GUGGaUCCGcGGuCCACGGCGCGugu -5'
24574 3' -61.5 NC_005264.1 + 79794 0.66 0.636447
Target:  5'- gCGCgUGGGCGuCUAGGccGCCGCugauGCGCu -3'
miRNA:   3'- -GUGgAUCCGC-GGUCCa-CGGCG----CGUGu -5'
24574 3' -61.5 NC_005264.1 + 116768 0.66 0.636447
Target:  5'- gCGCCUggGGGCGUUuagGGGUcGCCGagcuGCGCAu -3'
miRNA:   3'- -GUGGA--UCCGCGG---UCCA-CGGCg---CGUGU- -5'
24574 3' -61.5 NC_005264.1 + 40856 0.66 0.636447
Target:  5'- aCGCCgaacGGCGCCAGcGUaguaagGCuCGCGCAg- -3'
miRNA:   3'- -GUGGau--CCGCGGUC-CA------CG-GCGCGUgu -5'
24574 3' -61.5 NC_005264.1 + 24424 0.66 0.626517
Target:  5'- aACUUcGGCGCCGGaGUGUCuuacuaucccgGCGCGCu -3'
miRNA:   3'- gUGGAuCCGCGGUC-CACGG-----------CGCGUGu -5'
24574 3' -61.5 NC_005264.1 + 96850 0.66 0.626517
Target:  5'- aACCgggGGuGCGCUAac-GCCGCGCGCGa -3'
miRNA:   3'- gUGGa--UC-CGCGGUccaCGGCGCGUGU- -5'
24574 3' -61.5 NC_005264.1 + 50026 0.67 0.616592
Target:  5'- gGCUgcGGCGUac-GUGCuCGCGCACAa -3'
miRNA:   3'- gUGGauCCGCGgucCACG-GCGCGUGU- -5'
24574 3' -61.5 NC_005264.1 + 12285 0.67 0.606677
Target:  5'- gUACCcuGGCGgCAGG-GCgGUGCGCAc -3'
miRNA:   3'- -GUGGauCCGCgGUCCaCGgCGCGUGU- -5'
24574 3' -61.5 NC_005264.1 + 3637 0.67 0.606677
Target:  5'- gCACC-GGGCGCCAcGG-GCgGCGgACc -3'
miRNA:   3'- -GUGGaUCCGCGGU-CCaCGgCGCgUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.