Results 1 - 20 of 59 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24574 | 3' | -61.5 | NC_005264.1 | + | 8439 | 0.66 | 0.685896 |
Target: 5'- aCACCaGGGCGCCGcuGGccagacuaaCCGCGCugGc -3' miRNA: 3'- -GUGGaUCCGCGGU--CCac-------GGCGCGugU- -5' |
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24574 | 3' | -61.5 | NC_005264.1 | + | 150817 | 0.66 | 0.676059 |
Target: 5'- uCGCCUaaGGGCGgC-GGUcGCCGC-CGCAg -3' miRNA: 3'- -GUGGA--UCCGCgGuCCA-CGGCGcGUGU- -5' |
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24574 | 3' | -61.5 | NC_005264.1 | + | 50559 | 0.66 | 0.666187 |
Target: 5'- aAgCUAGGCGCgCGcGUGCgggaaGCGCACGc -3' miRNA: 3'- gUgGAUCCGCG-GUcCACGg----CGCGUGU- -5' |
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24574 | 3' | -61.5 | NC_005264.1 | + | 51935 | 0.66 | 0.666187 |
Target: 5'- gCGCCgagcuuGGCGa-GGGUGCCGCuaACGc -3' miRNA: 3'- -GUGGau----CCGCggUCCACGGCGcgUGU- -5' |
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24574 | 3' | -61.5 | NC_005264.1 | + | 126177 | 0.66 | 0.656289 |
Target: 5'- aACgUGGucGCgGCCAGGUccauCCGCGCACGg -3' miRNA: 3'- gUGgAUC--CG-CGGUCCAc---GGCGCGUGU- -5' |
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24574 | 3' | -61.5 | NC_005264.1 | + | 112996 | 0.66 | 0.636447 |
Target: 5'- uCACCaGGGC-CCcGGUGCCGUGUu-- -3' miRNA: 3'- -GUGGaUCCGcGGuCCACGGCGCGugu -5' |
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24574 | 3' | -61.5 | NC_005264.1 | + | 112490 | 0.66 | 0.636447 |
Target: 5'- gCACCgaaGGGCuGCCgcaggacaAGGUcgacGCCGCGUACu -3' miRNA: 3'- -GUGGa--UCCG-CGG--------UCCA----CGGCGCGUGu -5' |
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24574 | 3' | -61.5 | NC_005264.1 | + | 96850 | 0.66 | 0.626517 |
Target: 5'- aACCgggGGuGCGCUAac-GCCGCGCGCGa -3' miRNA: 3'- gUGGa--UC-CGCGGUccaCGGCGCGUGU- -5' |
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24574 | 3' | -61.5 | NC_005264.1 | + | 24424 | 0.66 | 0.626517 |
Target: 5'- aACUUcGGCGCCGGaGUGUCuuacuaucccgGCGCGCu -3' miRNA: 3'- gUGGAuCCGCGGUC-CACGG-----------CGCGUGu -5' |
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24574 | 3' | -61.5 | NC_005264.1 | + | 79794 | 0.66 | 0.636447 |
Target: 5'- gCGCgUGGGCGuCUAGGccGCCGCugauGCGCu -3' miRNA: 3'- -GUGgAUCCGC-GGUCCa-CGGCG----CGUGu -5' |
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24574 | 3' | -61.5 | NC_005264.1 | + | 131235 | 0.66 | 0.676059 |
Target: 5'- uCGCCUaaGGGCGgC-GGUcGCCGC-CGCAg -3' miRNA: 3'- -GUGGA--UCCGCgGuCCA-CGGCGcGUGU- -5' |
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24574 | 3' | -61.5 | NC_005264.1 | + | 93972 | 0.66 | 0.674087 |
Target: 5'- gGCCgcGGcCGCCGGGcaggucaucgucGUCGCGCACc -3' miRNA: 3'- gUGGauCC-GCGGUCCa-----------CGGCGCGUGu -5' |
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24574 | 3' | -61.5 | NC_005264.1 | + | 58193 | 0.66 | 0.660251 |
Target: 5'- gGCCUGucCGCCGGGgccgcugagccacgGCCGCcGCGCGg -3' miRNA: 3'- gUGGAUccGCGGUCCa-------------CGGCG-CGUGU- -5' |
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24574 | 3' | -61.5 | NC_005264.1 | + | 155876 | 0.66 | 0.656289 |
Target: 5'- aACgUGGucGCgGCCAGGUccauCCGCGCACGg -3' miRNA: 3'- gUGgAUC--CG-CGGUCCAc---GGCGCGUGU- -5' |
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24574 | 3' | -61.5 | NC_005264.1 | + | 40856 | 0.66 | 0.636447 |
Target: 5'- aCGCCgaacGGCGCCAGcGUaguaagGCuCGCGCAg- -3' miRNA: 3'- -GUGGau--CCGCGGUC-CA------CG-GCGCGUgu -5' |
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24574 | 3' | -61.5 | NC_005264.1 | + | 116768 | 0.66 | 0.636447 |
Target: 5'- gCGCCUggGGGCGUUuagGGGUcGCCGagcuGCGCAu -3' miRNA: 3'- -GUGGA--UCCGCGG---UCCA-CGGCg---CGUGU- -5' |
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24574 | 3' | -61.5 | NC_005264.1 | + | 45449 | 0.66 | 0.685896 |
Target: 5'- aACCccuGGCGCCAGacaggGCCGCgaugaacuugGCGCAc -3' miRNA: 3'- gUGGau-CCGCGGUCca---CGGCG----------CGUGU- -5' |
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24574 | 3' | -61.5 | NC_005264.1 | + | 151068 | 0.67 | 0.596781 |
Target: 5'- uGCCUGacgaggucGCGCCAuGUcuuGCCGCGCGCGg -3' miRNA: 3'- gUGGAUc-------CGCGGUcCA---CGGCGCGUGU- -5' |
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24574 | 3' | -61.5 | NC_005264.1 | + | 101113 | 0.67 | 0.596781 |
Target: 5'- --aUUAGGCGCaCGGGcGCCGCcgcuuGCGCGa -3' miRNA: 3'- gugGAUCCGCG-GUCCaCGGCG-----CGUGU- -5' |
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24574 | 3' | -61.5 | NC_005264.1 | + | 3637 | 0.67 | 0.606677 |
Target: 5'- gCACC-GGGCGCCAcGG-GCgGCGgACc -3' miRNA: 3'- -GUGGaUCCGCGGU-CCaCGgCGCgUGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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