miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24574 3' -61.5 NC_005264.1 + 31264 1.08 0.001065
Target:  5'- aCACCUAGGCGCCAGGUGCCGCGCACAu -3'
miRNA:   3'- -GUGGAUCCGCGGUCCACGGCGCGUGU- -5'
24574 3' -61.5 NC_005264.1 + 3456 0.74 0.236305
Target:  5'- cCGCCcguGGCGCCcGGUGCCGCauccacgaugugGCACGc -3'
miRNA:   3'- -GUGGau-CCGCGGuCCACGGCG------------CGUGU- -5'
24574 3' -61.5 NC_005264.1 + 31444 0.73 0.277946
Target:  5'- gCACCU-GGCGCCuAGGUguggagggaGCgGCGCGCGu -3'
miRNA:   3'- -GUGGAuCCGCGG-UCCA---------CGgCGCGUGU- -5'
24574 3' -61.5 NC_005264.1 + 16571 0.73 0.277946
Target:  5'- -----cGGCGCCGGGgcgGCgGCGCACAu -3'
miRNA:   3'- guggauCCGCGGUCCa--CGgCGCGUGU- -5'
24574 3' -61.5 NC_005264.1 + 19421 0.72 0.332454
Target:  5'- gGCg-AGGCGCCGGGUgugGCCGCgggGCGCGg -3'
miRNA:   3'- gUGgaUCCGCGGUCCA---CGGCG---CGUGU- -5'
24574 3' -61.5 NC_005264.1 + 40000 0.72 0.332454
Target:  5'- cCAUCUAGGCGgauGcGUGCCGCGCAUc -3'
miRNA:   3'- -GUGGAUCCGCgguC-CACGGCGCGUGu -5'
24574 3' -61.5 NC_005264.1 + 8517 0.71 0.386269
Target:  5'- uCugCgGGGCGCaCA--UGCCGCGCGCAa -3'
miRNA:   3'- -GugGaUCCGCG-GUccACGGCGCGUGU- -5'
24574 3' -61.5 NC_005264.1 + 140620 0.69 0.463369
Target:  5'- cCGCCgacgAGGCGacgacuCCAcuUGCCGCGCACGc -3'
miRNA:   3'- -GUGGa---UCCGC------GGUccACGGCGCGUGU- -5'
24574 3' -61.5 NC_005264.1 + 27632 0.69 0.470611
Target:  5'- cCAUCUGGGUcucaGCCAGGaucgccgauuugGCgGCGCACGu -3'
miRNA:   3'- -GUGGAUCCG----CGGUCCa-----------CGgCGCGUGU- -5'
24574 3' -61.5 NC_005264.1 + 72210 0.69 0.47243
Target:  5'- aGCCgucucGCGUguGGcgGCCGCGCACGu -3'
miRNA:   3'- gUGGauc--CGCGguCCa-CGGCGCGUGU- -5'
24574 3' -61.5 NC_005264.1 + 104569 0.69 0.48158
Target:  5'- gUugUcGGGCGCCAGccuaucUGCCGCGCgACAu -3'
miRNA:   3'- -GugGaUCCGCGGUCc-----ACGGCGCG-UGU- -5'
24574 3' -61.5 NC_005264.1 + 80665 0.69 0.490816
Target:  5'- uGCCaggcAGGCGCgucgauccGGUGCCGgGCGCAg -3'
miRNA:   3'- gUGGa---UCCGCGgu------CCACGGCgCGUGU- -5'
24574 3' -61.5 NC_005264.1 + 42946 0.69 0.499197
Target:  5'- aCGCCggcuaGCGggagucgugcccaCCGGGUGCCGCGCAgAa -3'
miRNA:   3'- -GUGGauc--CGC-------------GGUCCACGGCGCGUgU- -5'
24574 3' -61.5 NC_005264.1 + 133683 0.69 0.499197
Target:  5'- aCGCCUGcuCGCCGcGGUccuugccGCCGCGCACu -3'
miRNA:   3'- -GUGGAUccGCGGU-CCA-------CGGCGCGUGu -5'
24574 3' -61.5 NC_005264.1 + 4205 0.69 0.500132
Target:  5'- -uUCUucauCGCCGGGUGCCGCGUGCc -3'
miRNA:   3'- guGGAucc-GCGGUCCACGGCGCGUGu -5'
24574 3' -61.5 NC_005264.1 + 162338 0.69 0.500132
Target:  5'- uGCUUAGGUGuCCAGGcaCCGCGCGu- -3'
miRNA:   3'- gUGGAUCCGC-GGUCCacGGCGCGUgu -5'
24574 3' -61.5 NC_005264.1 + 119715 0.69 0.500132
Target:  5'- uGCUUAGGUGuCCAGGcaCCGCGCGu- -3'
miRNA:   3'- gUGGAUCCGC-GGUCCacGGCGCGUgu -5'
24574 3' -61.5 NC_005264.1 + 79911 0.68 0.509526
Target:  5'- aCGCCgacGGGCGCCAaG-GCCGCggagGCGCGu -3'
miRNA:   3'- -GUGGa--UCCGCGGUcCaCGGCG----CGUGU- -5'
24574 3' -61.5 NC_005264.1 + 113175 0.68 0.518993
Target:  5'- gCACCgGGGC-CCuGGUgacGCCGCGCAg- -3'
miRNA:   3'- -GUGGaUCCGcGGuCCA---CGGCGCGUgu -5'
24574 3' -61.5 NC_005264.1 + 125004 0.68 0.518993
Target:  5'- aCGCCgUGGGCGCCucgguGGUGCaCGaCGguCGc -3'
miRNA:   3'- -GUGG-AUCCGCGGu----CCACG-GC-GCguGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.