miRNA display CGI


Results 21 - 40 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24574 3' -61.5 NC_005264.1 + 145025 0.67 0.606677
Target:  5'- gCACCggcucugacGGCGgCGGGUcgGCCGCGguCAg -3'
miRNA:   3'- -GUGGau-------CCGCgGUCCA--CGGCGCguGU- -5'
24574 3' -61.5 NC_005264.1 + 89829 0.67 0.605687
Target:  5'- cCGCCgugGGGCGCCAGGagcuuucUGCgGUGUc-- -3'
miRNA:   3'- -GUGGa--UCCGCGGUCC-------ACGgCGCGugu -5'
24574 3' -61.5 NC_005264.1 + 101113 0.67 0.596781
Target:  5'- --aUUAGGCGCaCGGGcGCCGCcgcuuGCGCGa -3'
miRNA:   3'- gugGAUCCGCG-GUCCaCGGCG-----CGUGU- -5'
24574 3' -61.5 NC_005264.1 + 151068 0.67 0.596781
Target:  5'- uGCCUGacgaggucGCGCCAuGUcuuGCCGCGCGCGg -3'
miRNA:   3'- gUGGAUc-------CGCGGUcCA---CGGCGCGUGU- -5'
24574 3' -61.5 NC_005264.1 + 116163 0.67 0.595792
Target:  5'- gGCCU-GGCGUucagcgucccuguCGGGcGCCGCGUACc -3'
miRNA:   3'- gUGGAuCCGCG-------------GUCCaCGGCGCGUGu -5'
24574 3' -61.5 NC_005264.1 + 129085 0.67 0.586909
Target:  5'- gGCCgUGGcGCGCCGGGa-CCGCGCcCGa -3'
miRNA:   3'- gUGG-AUC-CGCGGUCCacGGCGCGuGU- -5'
24574 3' -61.5 NC_005264.1 + 123765 0.67 0.586909
Target:  5'- cCGCCgagccGGCGuCCGGGgguggaccGCCGCGCGa- -3'
miRNA:   3'- -GUGGau---CCGC-GGUCCa-------CGGCGCGUgu -5'
24574 3' -61.5 NC_005264.1 + 64984 0.67 0.586909
Target:  5'- gCGCUUccGGUGCCcauGGGggcGCUGCGCGCAg -3'
miRNA:   3'- -GUGGAu-CCGCGG---UCCa--CGGCGCGUGU- -5'
24574 3' -61.5 NC_005264.1 + 106893 0.67 0.586909
Target:  5'- --aCUAGGCGCgCGaGUGUCGCGUugGc -3'
miRNA:   3'- gugGAUCCGCG-GUcCACGGCGCGugU- -5'
24574 3' -61.5 NC_005264.1 + 158287 0.67 0.586909
Target:  5'- cCGCCgagccGGCGuCCGGGgguggaccGCCGCGCGa- -3'
miRNA:   3'- -GUGGau---CCGC-GGUCCa-------CGGCGCGUgu -5'
24574 3' -61.5 NC_005264.1 + 152968 0.67 0.586909
Target:  5'- gGCCgUGGcGCGCCGGGa-CCGCGCcCGa -3'
miRNA:   3'- gUGG-AUC-CGCGGUCCacGGCGCGuGU- -5'
24574 3' -61.5 NC_005264.1 + 24498 0.67 0.577067
Target:  5'- uCGCgUucGGGCGCCu--UGUCGCGCACGc -3'
miRNA:   3'- -GUGgA--UCCGCGGuccACGGCGCGUGU- -5'
24574 3' -61.5 NC_005264.1 + 3690 0.67 0.577067
Target:  5'- gGCCUggcgcggaaaGGGCGCaCAGuacuUGCCGCGgGCGg -3'
miRNA:   3'- gUGGA----------UCCGCG-GUCc---ACGGCGCgUGU- -5'
24574 3' -61.5 NC_005264.1 + 26644 0.67 0.577067
Target:  5'- aACCUuagcgcGGCGCC-GGcGCCGCGCu-- -3'
miRNA:   3'- gUGGAu-----CCGCGGuCCaCGGCGCGugu -5'
24574 3' -61.5 NC_005264.1 + 75285 0.67 0.577067
Target:  5'- cCAgCUcGGCGCCGGcGccUGCCGCaGCGCc -3'
miRNA:   3'- -GUgGAuCCGCGGUC-C--ACGGCG-CGUGu -5'
24574 3' -61.5 NC_005264.1 + 36516 0.68 0.538129
Target:  5'- gGCCUcgacgaggcGGGCG-CAGGagccaucgGCCGCGCGCc -3'
miRNA:   3'- gUGGA---------UCCGCgGUCCa-------CGGCGCGUGu -5'
24574 3' -61.5 NC_005264.1 + 86730 0.68 0.528529
Target:  5'- cCAUCUGGGCGCgGGGggGCUGCugGCuCAu -3'
miRNA:   3'- -GUGGAUCCGCGgUCCa-CGGCG--CGuGU- -5'
24574 3' -61.5 NC_005264.1 + 78092 0.68 0.528529
Target:  5'- gCGCuCUGuuguaguguGGCGCCGGGUGCuCGCuuGCGg -3'
miRNA:   3'- -GUG-GAU---------CCGCGGUCCACG-GCGcgUGU- -5'
24574 3' -61.5 NC_005264.1 + 157049 0.68 0.518993
Target:  5'- aCGCCgUGGGCGCCucgguGGUGCaCGaCGguCGc -3'
miRNA:   3'- -GUGG-AUCCGCGGu----CCACG-GC-GCguGU- -5'
24574 3' -61.5 NC_005264.1 + 125004 0.68 0.518993
Target:  5'- aCGCCgUGGGCGCCucgguGGUGCaCGaCGguCGc -3'
miRNA:   3'- -GUGG-AUCCGCGGu----CCACG-GC-GCguGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.