miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24574 3' -61.5 NC_005264.1 + 3456 0.74 0.236305
Target:  5'- cCGCCcguGGCGCCcGGUGCCGCauccacgaugugGCACGc -3'
miRNA:   3'- -GUGGau-CCGCGGuCCACGGCG------------CGUGU- -5'
24574 3' -61.5 NC_005264.1 + 3637 0.67 0.606677
Target:  5'- gCACC-GGGCGCCAcGG-GCgGCGgACc -3'
miRNA:   3'- -GUGGaUCCGCGGU-CCaCGgCGCgUGu -5'
24574 3' -61.5 NC_005264.1 + 3690 0.67 0.577067
Target:  5'- gGCCUggcgcggaaaGGGCGCaCAGuacuUGCCGCGgGCGg -3'
miRNA:   3'- gUGGA----------UCCGCG-GUCc---ACGGCGCgUGU- -5'
24574 3' -61.5 NC_005264.1 + 4205 0.69 0.500132
Target:  5'- -uUCUucauCGCCGGGUGCCGCGUGCc -3'
miRNA:   3'- guGGAucc-GCGGUCCACGGCGCGUGu -5'
24574 3' -61.5 NC_005264.1 + 8439 0.66 0.685896
Target:  5'- aCACCaGGGCGCCGcuGGccagacuaaCCGCGCugGc -3'
miRNA:   3'- -GUGGaUCCGCGGU--CCac-------GGCGCGugU- -5'
24574 3' -61.5 NC_005264.1 + 8517 0.71 0.386269
Target:  5'- uCugCgGGGCGCaCA--UGCCGCGCGCAa -3'
miRNA:   3'- -GugGaUCCGCG-GUccACGGCGCGUGU- -5'
24574 3' -61.5 NC_005264.1 + 12285 0.67 0.606677
Target:  5'- gUACCcuGGCGgCAGG-GCgGUGCGCAc -3'
miRNA:   3'- -GUGGauCCGCgGUCCaCGgCGCGUGU- -5'
24574 3' -61.5 NC_005264.1 + 16571 0.73 0.277946
Target:  5'- -----cGGCGCCGGGgcgGCgGCGCACAu -3'
miRNA:   3'- guggauCCGCGGUCCa--CGgCGCGUGU- -5'
24574 3' -61.5 NC_005264.1 + 19421 0.72 0.332454
Target:  5'- gGCg-AGGCGCCGGGUgugGCCGCgggGCGCGg -3'
miRNA:   3'- gUGgaUCCGCGGUCCA---CGGCG---CGUGU- -5'
24574 3' -61.5 NC_005264.1 + 24424 0.66 0.626517
Target:  5'- aACUUcGGCGCCGGaGUGUCuuacuaucccgGCGCGCu -3'
miRNA:   3'- gUGGAuCCGCGGUC-CACGG-----------CGCGUGu -5'
24574 3' -61.5 NC_005264.1 + 24498 0.67 0.577067
Target:  5'- uCGCgUucGGGCGCCu--UGUCGCGCACGc -3'
miRNA:   3'- -GUGgA--UCCGCGGuccACGGCGCGUGU- -5'
24574 3' -61.5 NC_005264.1 + 26644 0.67 0.577067
Target:  5'- aACCUuagcgcGGCGCC-GGcGCCGCGCu-- -3'
miRNA:   3'- gUGGAu-----CCGCGGuCCaCGGCGCGugu -5'
24574 3' -61.5 NC_005264.1 + 27632 0.69 0.470611
Target:  5'- cCAUCUGGGUcucaGCCAGGaucgccgauuugGCgGCGCACGu -3'
miRNA:   3'- -GUGGAUCCG----CGGUCCa-----------CGgCGCGUGU- -5'
24574 3' -61.5 NC_005264.1 + 31264 1.08 0.001065
Target:  5'- aCACCUAGGCGCCAGGUGCCGCGCACAu -3'
miRNA:   3'- -GUGGAUCCGCGGUCCACGGCGCGUGU- -5'
24574 3' -61.5 NC_005264.1 + 31444 0.73 0.277946
Target:  5'- gCACCU-GGCGCCuAGGUguggagggaGCgGCGCGCGu -3'
miRNA:   3'- -GUGGAuCCGCGG-UCCA---------CGgCGCGUGU- -5'
24574 3' -61.5 NC_005264.1 + 36516 0.68 0.538129
Target:  5'- gGCCUcgacgaggcGGGCG-CAGGagccaucgGCCGCGCGCc -3'
miRNA:   3'- gUGGA---------UCCGCgGUCCa-------CGGCGCGUGu -5'
24574 3' -61.5 NC_005264.1 + 40000 0.72 0.332454
Target:  5'- cCAUCUAGGCGgauGcGUGCCGCGCAUc -3'
miRNA:   3'- -GUGGAUCCGCgguC-CACGGCGCGUGu -5'
24574 3' -61.5 NC_005264.1 + 40856 0.66 0.636447
Target:  5'- aCGCCgaacGGCGCCAGcGUaguaagGCuCGCGCAg- -3'
miRNA:   3'- -GUGGau--CCGCGGUC-CA------CG-GCGCGUgu -5'
24574 3' -61.5 NC_005264.1 + 42946 0.69 0.499197
Target:  5'- aCGCCggcuaGCGggagucgugcccaCCGGGUGCCGCGCAgAa -3'
miRNA:   3'- -GUGGauc--CGC-------------GGUCCACGGCGCGUgU- -5'
24574 3' -61.5 NC_005264.1 + 45449 0.66 0.685896
Target:  5'- aACCccuGGCGCCAGacaggGCCGCgaugaacuugGCGCAc -3'
miRNA:   3'- gUGGau-CCGCGGUCca---CGGCG----------CGUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.