miRNA display CGI


Results 21 - 40 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24574 3' -61.5 NC_005264.1 + 50026 0.67 0.616592
Target:  5'- gGCUgcGGCGUac-GUGCuCGCGCACAa -3'
miRNA:   3'- gUGGauCCGCGgucCACG-GCGCGUGU- -5'
24574 3' -61.5 NC_005264.1 + 50559 0.66 0.666187
Target:  5'- aAgCUAGGCGCgCGcGUGCgggaaGCGCACGc -3'
miRNA:   3'- gUgGAUCCGCG-GUcCACGg----CGCGUGU- -5'
24574 3' -61.5 NC_005264.1 + 51935 0.66 0.666187
Target:  5'- gCGCCgagcuuGGCGa-GGGUGCCGCuaACGc -3'
miRNA:   3'- -GUGGau----CCGCggUCCACGGCGcgUGU- -5'
24574 3' -61.5 NC_005264.1 + 58193 0.66 0.660251
Target:  5'- gGCCUGucCGCCGGGgccgcugagccacgGCCGCcGCGCGg -3'
miRNA:   3'- gUGGAUccGCGGUCCa-------------CGGCG-CGUGU- -5'
24574 3' -61.5 NC_005264.1 + 64984 0.67 0.586909
Target:  5'- gCGCUUccGGUGCCcauGGGggcGCUGCGCGCAg -3'
miRNA:   3'- -GUGGAu-CCGCGG---UCCa--CGGCGCGUGU- -5'
24574 3' -61.5 NC_005264.1 + 72210 0.69 0.47243
Target:  5'- aGCCgucucGCGUguGGcgGCCGCGCACGu -3'
miRNA:   3'- gUGGauc--CGCGguCCa-CGGCGCGUGU- -5'
24574 3' -61.5 NC_005264.1 + 75285 0.67 0.577067
Target:  5'- cCAgCUcGGCGCCGGcGccUGCCGCaGCGCc -3'
miRNA:   3'- -GUgGAuCCGCGGUC-C--ACGGCG-CGUGu -5'
24574 3' -61.5 NC_005264.1 + 78092 0.68 0.528529
Target:  5'- gCGCuCUGuuguaguguGGCGCCGGGUGCuCGCuuGCGg -3'
miRNA:   3'- -GUG-GAU---------CCGCGGUCCACG-GCGcgUGU- -5'
24574 3' -61.5 NC_005264.1 + 79794 0.66 0.636447
Target:  5'- gCGCgUGGGCGuCUAGGccGCCGCugauGCGCu -3'
miRNA:   3'- -GUGgAUCCGC-GGUCCa-CGGCG----CGUGu -5'
24574 3' -61.5 NC_005264.1 + 79911 0.68 0.509526
Target:  5'- aCGCCgacGGGCGCCAaG-GCCGCggagGCGCGu -3'
miRNA:   3'- -GUGGa--UCCGCGGUcCaCGGCG----CGUGU- -5'
24574 3' -61.5 NC_005264.1 + 80665 0.69 0.490816
Target:  5'- uGCCaggcAGGCGCgucgauccGGUGCCGgGCGCAg -3'
miRNA:   3'- gUGGa---UCCGCGgu------CCACGGCgCGUGU- -5'
24574 3' -61.5 NC_005264.1 + 86730 0.68 0.528529
Target:  5'- cCAUCUGGGCGCgGGGggGCUGCugGCuCAu -3'
miRNA:   3'- -GUGGAUCCGCGgUCCa-CGGCG--CGuGU- -5'
24574 3' -61.5 NC_005264.1 + 89829 0.67 0.605687
Target:  5'- cCGCCgugGGGCGCCAGGagcuuucUGCgGUGUc-- -3'
miRNA:   3'- -GUGGa--UCCGCGGUCC-------ACGgCGCGugu -5'
24574 3' -61.5 NC_005264.1 + 93972 0.66 0.674087
Target:  5'- gGCCgcGGcCGCCGGGcaggucaucgucGUCGCGCACc -3'
miRNA:   3'- gUGGauCC-GCGGUCCa-----------CGGCGCGUGu -5'
24574 3' -61.5 NC_005264.1 + 96850 0.66 0.626517
Target:  5'- aACCgggGGuGCGCUAac-GCCGCGCGCGa -3'
miRNA:   3'- gUGGa--UC-CGCGGUccaCGGCGCGUGU- -5'
24574 3' -61.5 NC_005264.1 + 101113 0.67 0.596781
Target:  5'- --aUUAGGCGCaCGGGcGCCGCcgcuuGCGCGa -3'
miRNA:   3'- gugGAUCCGCG-GUCCaCGGCG-----CGUGU- -5'
24574 3' -61.5 NC_005264.1 + 104569 0.69 0.48158
Target:  5'- gUugUcGGGCGCCAGccuaucUGCCGCGCgACAu -3'
miRNA:   3'- -GugGaUCCGCGGUCc-----ACGGCGCG-UGU- -5'
24574 3' -61.5 NC_005264.1 + 106893 0.67 0.586909
Target:  5'- --aCUAGGCGCgCGaGUGUCGCGUugGc -3'
miRNA:   3'- gugGAUCCGCG-GUcCACGGCGCGugU- -5'
24574 3' -61.5 NC_005264.1 + 112490 0.66 0.636447
Target:  5'- gCACCgaaGGGCuGCCgcaggacaAGGUcgacGCCGCGUACu -3'
miRNA:   3'- -GUGGa--UCCG-CGG--------UCCA----CGGCGCGUGu -5'
24574 3' -61.5 NC_005264.1 + 112996 0.66 0.636447
Target:  5'- uCACCaGGGC-CCcGGUGCCGUGUu-- -3'
miRNA:   3'- -GUGGaUCCGcGGuCCACGGCGCGugu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.