Results 41 - 59 of 59 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24574 | 3' | -61.5 | NC_005264.1 | + | 113175 | 0.68 | 0.518993 |
Target: 5'- gCACCgGGGC-CCuGGUgacGCCGCGCAg- -3' miRNA: 3'- -GUGGaUCCGcGGuCCA---CGGCGCGUgu -5' |
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24574 | 3' | -61.5 | NC_005264.1 | + | 116163 | 0.67 | 0.595792 |
Target: 5'- gGCCU-GGCGUucagcgucccuguCGGGcGCCGCGUACc -3' miRNA: 3'- gUGGAuCCGCG-------------GUCCaCGGCGCGUGu -5' |
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24574 | 3' | -61.5 | NC_005264.1 | + | 116768 | 0.66 | 0.636447 |
Target: 5'- gCGCCUggGGGCGUUuagGGGUcGCCGagcuGCGCAu -3' miRNA: 3'- -GUGGA--UCCGCGG---UCCA-CGGCg---CGUGU- -5' |
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24574 | 3' | -61.5 | NC_005264.1 | + | 119715 | 0.69 | 0.500132 |
Target: 5'- uGCUUAGGUGuCCAGGcaCCGCGCGu- -3' miRNA: 3'- gUGGAUCCGC-GGUCCacGGCGCGUgu -5' |
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24574 | 3' | -61.5 | NC_005264.1 | + | 123765 | 0.67 | 0.586909 |
Target: 5'- cCGCCgagccGGCGuCCGGGgguggaccGCCGCGCGa- -3' miRNA: 3'- -GUGGau---CCGC-GGUCCa-------CGGCGCGUgu -5' |
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24574 | 3' | -61.5 | NC_005264.1 | + | 125004 | 0.68 | 0.518993 |
Target: 5'- aCGCCgUGGGCGCCucgguGGUGCaCGaCGguCGc -3' miRNA: 3'- -GUGG-AUCCGCGGu----CCACG-GC-GCguGU- -5' |
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24574 | 3' | -61.5 | NC_005264.1 | + | 126177 | 0.66 | 0.656289 |
Target: 5'- aACgUGGucGCgGCCAGGUccauCCGCGCACGg -3' miRNA: 3'- gUGgAUC--CG-CGGUCCAc---GGCGCGUGU- -5' |
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24574 | 3' | -61.5 | NC_005264.1 | + | 129085 | 0.67 | 0.586909 |
Target: 5'- gGCCgUGGcGCGCCGGGa-CCGCGCcCGa -3' miRNA: 3'- gUGG-AUC-CGCGGUCCacGGCGCGuGU- -5' |
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24574 | 3' | -61.5 | NC_005264.1 | + | 131235 | 0.66 | 0.676059 |
Target: 5'- uCGCCUaaGGGCGgC-GGUcGCCGC-CGCAg -3' miRNA: 3'- -GUGGA--UCCGCgGuCCA-CGGCGcGUGU- -5' |
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24574 | 3' | -61.5 | NC_005264.1 | + | 133683 | 0.69 | 0.499197 |
Target: 5'- aCGCCUGcuCGCCGcGGUccuugccGCCGCGCACu -3' miRNA: 3'- -GUGGAUccGCGGU-CCA-------CGGCGCGUGu -5' |
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24574 | 3' | -61.5 | NC_005264.1 | + | 140620 | 0.69 | 0.463369 |
Target: 5'- cCGCCgacgAGGCGacgacuCCAcuUGCCGCGCACGc -3' miRNA: 3'- -GUGGa---UCCGC------GGUccACGGCGCGUGU- -5' |
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24574 | 3' | -61.5 | NC_005264.1 | + | 145025 | 0.67 | 0.606677 |
Target: 5'- gCACCggcucugacGGCGgCGGGUcgGCCGCGguCAg -3' miRNA: 3'- -GUGGau-------CCGCgGUCCA--CGGCGCguGU- -5' |
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24574 | 3' | -61.5 | NC_005264.1 | + | 150817 | 0.66 | 0.676059 |
Target: 5'- uCGCCUaaGGGCGgC-GGUcGCCGC-CGCAg -3' miRNA: 3'- -GUGGA--UCCGCgGuCCA-CGGCGcGUGU- -5' |
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24574 | 3' | -61.5 | NC_005264.1 | + | 151068 | 0.67 | 0.596781 |
Target: 5'- uGCCUGacgaggucGCGCCAuGUcuuGCCGCGCGCGg -3' miRNA: 3'- gUGGAUc-------CGCGGUcCA---CGGCGCGUGU- -5' |
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24574 | 3' | -61.5 | NC_005264.1 | + | 152968 | 0.67 | 0.586909 |
Target: 5'- gGCCgUGGcGCGCCGGGa-CCGCGCcCGa -3' miRNA: 3'- gUGG-AUC-CGCGGUCCacGGCGCGuGU- -5' |
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24574 | 3' | -61.5 | NC_005264.1 | + | 155876 | 0.66 | 0.656289 |
Target: 5'- aACgUGGucGCgGCCAGGUccauCCGCGCACGg -3' miRNA: 3'- gUGgAUC--CG-CGGUCCAc---GGCGCGUGU- -5' |
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24574 | 3' | -61.5 | NC_005264.1 | + | 157049 | 0.68 | 0.518993 |
Target: 5'- aCGCCgUGGGCGCCucgguGGUGCaCGaCGguCGc -3' miRNA: 3'- -GUGG-AUCCGCGGu----CCACG-GC-GCguGU- -5' |
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24574 | 3' | -61.5 | NC_005264.1 | + | 158287 | 0.67 | 0.586909 |
Target: 5'- cCGCCgagccGGCGuCCGGGgguggaccGCCGCGCGa- -3' miRNA: 3'- -GUGGau---CCGC-GGUCCa-------CGGCGCGUgu -5' |
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24574 | 3' | -61.5 | NC_005264.1 | + | 162338 | 0.69 | 0.500132 |
Target: 5'- uGCUUAGGUGuCCAGGcaCCGCGCGu- -3' miRNA: 3'- gUGGAUCCGC-GGUCCacGGCGCGUgu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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