miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24574 3' -61.5 NC_005264.1 + 162338 0.69 0.500132
Target:  5'- uGCUUAGGUGuCCAGGcaCCGCGCGu- -3'
miRNA:   3'- gUGGAUCCGC-GGUCCacGGCGCGUgu -5'
24574 3' -61.5 NC_005264.1 + 158287 0.67 0.586909
Target:  5'- cCGCCgagccGGCGuCCGGGgguggaccGCCGCGCGa- -3'
miRNA:   3'- -GUGGau---CCGC-GGUCCa-------CGGCGCGUgu -5'
24574 3' -61.5 NC_005264.1 + 157049 0.68 0.518993
Target:  5'- aCGCCgUGGGCGCCucgguGGUGCaCGaCGguCGc -3'
miRNA:   3'- -GUGG-AUCCGCGGu----CCACG-GC-GCguGU- -5'
24574 3' -61.5 NC_005264.1 + 155876 0.66 0.656289
Target:  5'- aACgUGGucGCgGCCAGGUccauCCGCGCACGg -3'
miRNA:   3'- gUGgAUC--CG-CGGUCCAc---GGCGCGUGU- -5'
24574 3' -61.5 NC_005264.1 + 152968 0.67 0.586909
Target:  5'- gGCCgUGGcGCGCCGGGa-CCGCGCcCGa -3'
miRNA:   3'- gUGG-AUC-CGCGGUCCacGGCGCGuGU- -5'
24574 3' -61.5 NC_005264.1 + 151068 0.67 0.596781
Target:  5'- uGCCUGacgaggucGCGCCAuGUcuuGCCGCGCGCGg -3'
miRNA:   3'- gUGGAUc-------CGCGGUcCA---CGGCGCGUGU- -5'
24574 3' -61.5 NC_005264.1 + 150817 0.66 0.676059
Target:  5'- uCGCCUaaGGGCGgC-GGUcGCCGC-CGCAg -3'
miRNA:   3'- -GUGGA--UCCGCgGuCCA-CGGCGcGUGU- -5'
24574 3' -61.5 NC_005264.1 + 145025 0.67 0.606677
Target:  5'- gCACCggcucugacGGCGgCGGGUcgGCCGCGguCAg -3'
miRNA:   3'- -GUGGau-------CCGCgGUCCA--CGGCGCguGU- -5'
24574 3' -61.5 NC_005264.1 + 140620 0.69 0.463369
Target:  5'- cCGCCgacgAGGCGacgacuCCAcuUGCCGCGCACGc -3'
miRNA:   3'- -GUGGa---UCCGC------GGUccACGGCGCGUGU- -5'
24574 3' -61.5 NC_005264.1 + 133683 0.69 0.499197
Target:  5'- aCGCCUGcuCGCCGcGGUccuugccGCCGCGCACu -3'
miRNA:   3'- -GUGGAUccGCGGU-CCA-------CGGCGCGUGu -5'
24574 3' -61.5 NC_005264.1 + 131235 0.66 0.676059
Target:  5'- uCGCCUaaGGGCGgC-GGUcGCCGC-CGCAg -3'
miRNA:   3'- -GUGGA--UCCGCgGuCCA-CGGCGcGUGU- -5'
24574 3' -61.5 NC_005264.1 + 129085 0.67 0.586909
Target:  5'- gGCCgUGGcGCGCCGGGa-CCGCGCcCGa -3'
miRNA:   3'- gUGG-AUC-CGCGGUCCacGGCGCGuGU- -5'
24574 3' -61.5 NC_005264.1 + 126177 0.66 0.656289
Target:  5'- aACgUGGucGCgGCCAGGUccauCCGCGCACGg -3'
miRNA:   3'- gUGgAUC--CG-CGGUCCAc---GGCGCGUGU- -5'
24574 3' -61.5 NC_005264.1 + 125004 0.68 0.518993
Target:  5'- aCGCCgUGGGCGCCucgguGGUGCaCGaCGguCGc -3'
miRNA:   3'- -GUGG-AUCCGCGGu----CCACG-GC-GCguGU- -5'
24574 3' -61.5 NC_005264.1 + 123765 0.67 0.586909
Target:  5'- cCGCCgagccGGCGuCCGGGgguggaccGCCGCGCGa- -3'
miRNA:   3'- -GUGGau---CCGC-GGUCCa-------CGGCGCGUgu -5'
24574 3' -61.5 NC_005264.1 + 119715 0.69 0.500132
Target:  5'- uGCUUAGGUGuCCAGGcaCCGCGCGu- -3'
miRNA:   3'- gUGGAUCCGC-GGUCCacGGCGCGUgu -5'
24574 3' -61.5 NC_005264.1 + 116768 0.66 0.636447
Target:  5'- gCGCCUggGGGCGUUuagGGGUcGCCGagcuGCGCAu -3'
miRNA:   3'- -GUGGA--UCCGCGG---UCCA-CGGCg---CGUGU- -5'
24574 3' -61.5 NC_005264.1 + 116163 0.67 0.595792
Target:  5'- gGCCU-GGCGUucagcgucccuguCGGGcGCCGCGUACc -3'
miRNA:   3'- gUGGAuCCGCG-------------GUCCaCGGCGCGUGu -5'
24574 3' -61.5 NC_005264.1 + 113175 0.68 0.518993
Target:  5'- gCACCgGGGC-CCuGGUgacGCCGCGCAg- -3'
miRNA:   3'- -GUGGaUCCGcGGuCCA---CGGCGCGUgu -5'
24574 3' -61.5 NC_005264.1 + 112996 0.66 0.636447
Target:  5'- uCACCaGGGC-CCcGGUGCCGUGUu-- -3'
miRNA:   3'- -GUGGaUCCGcGGuCCACGGCGCGugu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.