Results 21 - 40 of 59 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24574 | 3' | -61.5 | NC_005264.1 | + | 150817 | 0.66 | 0.676059 |
Target: 5'- uCGCCUaaGGGCGgC-GGUcGCCGC-CGCAg -3' miRNA: 3'- -GUGGA--UCCGCgGuCCA-CGGCGcGUGU- -5' |
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24574 | 3' | -61.5 | NC_005264.1 | + | 112996 | 0.66 | 0.636447 |
Target: 5'- uCACCaGGGC-CCcGGUGCCGUGUu-- -3' miRNA: 3'- -GUGGaUCCGcGGuCCACGGCGCGugu -5' |
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24574 | 3' | -61.5 | NC_005264.1 | + | 157049 | 0.68 | 0.518993 |
Target: 5'- aCGCCgUGGGCGCCucgguGGUGCaCGaCGguCGc -3' miRNA: 3'- -GUGG-AUCCGCGGu----CCACG-GC-GCguGU- -5' |
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24574 | 3' | -61.5 | NC_005264.1 | + | 4205 | 0.69 | 0.500132 |
Target: 5'- -uUCUucauCGCCGGGUGCCGCGUGCc -3' miRNA: 3'- guGGAucc-GCGGUCCACGGCGCGUGu -5' |
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24574 | 3' | -61.5 | NC_005264.1 | + | 119715 | 0.69 | 0.500132 |
Target: 5'- uGCUUAGGUGuCCAGGcaCCGCGCGu- -3' miRNA: 3'- gUGGAUCCGC-GGUCCacGGCGCGUgu -5' |
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24574 | 3' | -61.5 | NC_005264.1 | + | 116768 | 0.66 | 0.636447 |
Target: 5'- gCGCCUggGGGCGUUuagGGGUcGCCGagcuGCGCAu -3' miRNA: 3'- -GUGGA--UCCGCGG---UCCA-CGGCg---CGUGU- -5' |
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24574 | 3' | -61.5 | NC_005264.1 | + | 93972 | 0.66 | 0.674087 |
Target: 5'- gGCCgcGGcCGCCGGGcaggucaucgucGUCGCGCACc -3' miRNA: 3'- gUGGauCC-GCGGUCCa-----------CGGCGCGUGu -5' |
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24574 | 3' | -61.5 | NC_005264.1 | + | 104569 | 0.69 | 0.48158 |
Target: 5'- gUugUcGGGCGCCAGccuaucUGCCGCGCgACAu -3' miRNA: 3'- -GugGaUCCGCGGUCc-----ACGGCGCG-UGU- -5' |
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24574 | 3' | -61.5 | NC_005264.1 | + | 80665 | 0.69 | 0.490816 |
Target: 5'- uGCCaggcAGGCGCgucgauccGGUGCCGgGCGCAg -3' miRNA: 3'- gUGGa---UCCGCGgu------CCACGGCgCGUGU- -5' |
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24574 | 3' | -61.5 | NC_005264.1 | + | 42946 | 0.69 | 0.499197 |
Target: 5'- aCGCCggcuaGCGggagucgugcccaCCGGGUGCCGCGCAgAa -3' miRNA: 3'- -GUGGauc--CGC-------------GGUCCACGGCGCGUgU- -5' |
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24574 | 3' | -61.5 | NC_005264.1 | + | 151068 | 0.67 | 0.596781 |
Target: 5'- uGCCUGacgaggucGCGCCAuGUcuuGCCGCGCGCGg -3' miRNA: 3'- gUGGAUc-------CGCGGUcCA---CGGCGCGUGU- -5' |
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24574 | 3' | -61.5 | NC_005264.1 | + | 101113 | 0.67 | 0.596781 |
Target: 5'- --aUUAGGCGCaCGGGcGCCGCcgcuuGCGCGa -3' miRNA: 3'- gugGAUCCGCG-GUCCaCGGCG-----CGUGU- -5' |
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24574 | 3' | -61.5 | NC_005264.1 | + | 3637 | 0.67 | 0.606677 |
Target: 5'- gCACC-GGGCGCCAcGG-GCgGCGgACc -3' miRNA: 3'- -GUGGaUCCGCGGU-CCaCGgCGCgUGu -5' |
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24574 | 3' | -61.5 | NC_005264.1 | + | 145025 | 0.67 | 0.606677 |
Target: 5'- gCACCggcucugacGGCGgCGGGUcgGCCGCGguCAg -3' miRNA: 3'- -GUGGau-------CCGCgGUCCA--CGGCGCguGU- -5' |
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24574 | 3' | -61.5 | NC_005264.1 | + | 40856 | 0.66 | 0.636447 |
Target: 5'- aCGCCgaacGGCGCCAGcGUaguaagGCuCGCGCAg- -3' miRNA: 3'- -GUGGau--CCGCGGUC-CA------CG-GCGCGUgu -5' |
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24574 | 3' | -61.5 | NC_005264.1 | + | 78092 | 0.68 | 0.528529 |
Target: 5'- gCGCuCUGuuguaguguGGCGCCGGGUGCuCGCuuGCGg -3' miRNA: 3'- -GUG-GAU---------CCGCGGUCCACG-GCGcgUGU- -5' |
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24574 | 3' | -61.5 | NC_005264.1 | + | 125004 | 0.68 | 0.518993 |
Target: 5'- aCGCCgUGGGCGCCucgguGGUGCaCGaCGguCGc -3' miRNA: 3'- -GUGG-AUCCGCGGu----CCACG-GC-GCguGU- -5' |
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24574 | 3' | -61.5 | NC_005264.1 | + | 113175 | 0.68 | 0.518993 |
Target: 5'- gCACCgGGGC-CCuGGUgacGCCGCGCAg- -3' miRNA: 3'- -GUGGaUCCGcGGuCCA---CGGCGCGUgu -5' |
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24574 | 3' | -61.5 | NC_005264.1 | + | 79911 | 0.68 | 0.509526 |
Target: 5'- aCGCCgacGGGCGCCAaG-GCCGCggagGCGCGu -3' miRNA: 3'- -GUGGa--UCCGCGGUcCaCGGCG----CGUGU- -5' |
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24574 | 3' | -61.5 | NC_005264.1 | + | 162338 | 0.69 | 0.500132 |
Target: 5'- uGCUUAGGUGuCCAGGcaCCGCGCGu- -3' miRNA: 3'- gUGGAUCCGC-GGUCCacGGCGCGUgu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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