miRNA display CGI


Results 41 - 59 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24574 3' -61.5 NC_005264.1 + 155876 0.66 0.656289
Target:  5'- aACgUGGucGCgGCCAGGUccauCCGCGCACGg -3'
miRNA:   3'- gUGgAUC--CG-CGGUCCAc---GGCGCGUGU- -5'
24574 3' -61.5 NC_005264.1 + 58193 0.66 0.660251
Target:  5'- gGCCUGucCGCCGGGgccgcugagccacgGCCGCcGCGCGg -3'
miRNA:   3'- gUGGAUccGCGGUCCa-------------CGGCG-CGUGU- -5'
24574 3' -61.5 NC_005264.1 + 93972 0.66 0.674087
Target:  5'- gGCCgcGGcCGCCGGGcaggucaucgucGUCGCGCACc -3'
miRNA:   3'- gUGGauCC-GCGGUCCa-----------CGGCGCGUGu -5'
24574 3' -61.5 NC_005264.1 + 131235 0.66 0.676059
Target:  5'- uCGCCUaaGGGCGgC-GGUcGCCGC-CGCAg -3'
miRNA:   3'- -GUGGA--UCCGCgGuCCA-CGGCGcGUGU- -5'
24574 3' -61.5 NC_005264.1 + 151068 0.67 0.596781
Target:  5'- uGCCUGacgaggucGCGCCAuGUcuuGCCGCGCGCGg -3'
miRNA:   3'- gUGGAUc-------CGCGGUcCA---CGGCGCGUGU- -5'
24574 3' -61.5 NC_005264.1 + 116163 0.67 0.595792
Target:  5'- gGCCU-GGCGUucagcgucccuguCGGGcGCCGCGUACc -3'
miRNA:   3'- gUGGAuCCGCG-------------GUCCaCGGCGCGUGu -5'
24574 3' -61.5 NC_005264.1 + 80665 0.69 0.490816
Target:  5'- uGCCaggcAGGCGCgucgauccGGUGCCGgGCGCAg -3'
miRNA:   3'- gUGGa---UCCGCGgu------CCACGGCgCGUGU- -5'
24574 3' -61.5 NC_005264.1 + 42946 0.69 0.499197
Target:  5'- aCGCCggcuaGCGggagucgugcccaCCGGGUGCCGCGCAgAa -3'
miRNA:   3'- -GUGGauc--CGC-------------GGUCCACGGCGCGUgU- -5'
24574 3' -61.5 NC_005264.1 + 162338 0.69 0.500132
Target:  5'- uGCUUAGGUGuCCAGGcaCCGCGCGu- -3'
miRNA:   3'- gUGGAUCCGC-GGUCCacGGCGCGUgu -5'
24574 3' -61.5 NC_005264.1 + 79911 0.68 0.509526
Target:  5'- aCGCCgacGGGCGCCAaG-GCCGCggagGCGCGu -3'
miRNA:   3'- -GUGGa--UCCGCGGUcCaCGGCG----CGUGU- -5'
24574 3' -61.5 NC_005264.1 + 113175 0.68 0.518993
Target:  5'- gCACCgGGGC-CCuGGUgacGCCGCGCAg- -3'
miRNA:   3'- -GUGGaUCCGcGGuCCA---CGGCGCGUgu -5'
24574 3' -61.5 NC_005264.1 + 125004 0.68 0.518993
Target:  5'- aCGCCgUGGGCGCCucgguGGUGCaCGaCGguCGc -3'
miRNA:   3'- -GUGG-AUCCGCGGu----CCACG-GC-GCguGU- -5'
24574 3' -61.5 NC_005264.1 + 86730 0.68 0.528529
Target:  5'- cCAUCUGGGCGCgGGGggGCUGCugGCuCAu -3'
miRNA:   3'- -GUGGAUCCGCGgUCCa-CGGCG--CGuGU- -5'
24574 3' -61.5 NC_005264.1 + 75285 0.67 0.577067
Target:  5'- cCAgCUcGGCGCCGGcGccUGCCGCaGCGCc -3'
miRNA:   3'- -GUgGAuCCGCGGUC-C--ACGGCG-CGUGu -5'
24574 3' -61.5 NC_005264.1 + 129085 0.67 0.586909
Target:  5'- gGCCgUGGcGCGCCGGGa-CCGCGCcCGa -3'
miRNA:   3'- gUGG-AUC-CGCGGUCCacGGCGCGuGU- -5'
24574 3' -61.5 NC_005264.1 + 64984 0.67 0.586909
Target:  5'- gCGCUUccGGUGCCcauGGGggcGCUGCGCGCAg -3'
miRNA:   3'- -GUGGAu-CCGCGG---UCCa--CGGCGCGUGU- -5'
24574 3' -61.5 NC_005264.1 + 106893 0.67 0.586909
Target:  5'- --aCUAGGCGCgCGaGUGUCGCGUugGc -3'
miRNA:   3'- gugGAUCCGCG-GUcCACGGCGCGugU- -5'
24574 3' -61.5 NC_005264.1 + 158287 0.67 0.586909
Target:  5'- cCGCCgagccGGCGuCCGGGgguggaccGCCGCGCGa- -3'
miRNA:   3'- -GUGGau---CCGC-GGUCCa-------CGGCGCGUgu -5'
24574 3' -61.5 NC_005264.1 + 8439 0.66 0.685896
Target:  5'- aCACCaGGGCGCCGcuGGccagacuaaCCGCGCugGc -3'
miRNA:   3'- -GUGGaUCCGCGGU--CCac-------GGCGCGugU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.