miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24574 3' -61.5 NC_005264.1 + 75285 0.67 0.577067
Target:  5'- cCAgCUcGGCGCCGGcGccUGCCGCaGCGCc -3'
miRNA:   3'- -GUgGAuCCGCGGUC-C--ACGGCG-CGUGu -5'
24574 3' -61.5 NC_005264.1 + 3637 0.67 0.606677
Target:  5'- gCACC-GGGCGCCAcGG-GCgGCGgACc -3'
miRNA:   3'- -GUGGaUCCGCGGU-CCaCGgCGCgUGu -5'
24574 3' -61.5 NC_005264.1 + 101113 0.67 0.596781
Target:  5'- --aUUAGGCGCaCGGGcGCCGCcgcuuGCGCGa -3'
miRNA:   3'- gugGAUCCGCG-GUCCaCGGCG-----CGUGU- -5'
24574 3' -61.5 NC_005264.1 + 151068 0.67 0.596781
Target:  5'- uGCCUGacgaggucGCGCCAuGUcuuGCCGCGCGCGg -3'
miRNA:   3'- gUGGAUc-------CGCGGUcCA---CGGCGCGUGU- -5'
24574 3' -61.5 NC_005264.1 + 116163 0.67 0.595792
Target:  5'- gGCCU-GGCGUucagcgucccuguCGGGcGCCGCGUACc -3'
miRNA:   3'- gUGGAuCCGCG-------------GUCCaCGGCGCGUGu -5'
24574 3' -61.5 NC_005264.1 + 158287 0.67 0.586909
Target:  5'- cCGCCgagccGGCGuCCGGGgguggaccGCCGCGCGa- -3'
miRNA:   3'- -GUGGau---CCGC-GGUCCa-------CGGCGCGUgu -5'
24574 3' -61.5 NC_005264.1 + 106893 0.67 0.586909
Target:  5'- --aCUAGGCGCgCGaGUGUCGCGUugGc -3'
miRNA:   3'- gugGAUCCGCG-GUcCACGGCGCGugU- -5'
24574 3' -61.5 NC_005264.1 + 64984 0.67 0.586909
Target:  5'- gCGCUUccGGUGCCcauGGGggcGCUGCGCGCAg -3'
miRNA:   3'- -GUGGAu-CCGCGG---UCCa--CGGCGCGUGU- -5'
24574 3' -61.5 NC_005264.1 + 129085 0.67 0.586909
Target:  5'- gGCCgUGGcGCGCCGGGa-CCGCGCcCGa -3'
miRNA:   3'- gUGG-AUC-CGCGGUCCacGGCGCGuGU- -5'
24574 3' -61.5 NC_005264.1 + 145025 0.67 0.606677
Target:  5'- gCACCggcucugacGGCGgCGGGUcgGCCGCGguCAg -3'
miRNA:   3'- -GUGGau-------CCGCgGUCCA--CGGCGCguGU- -5'
24574 3' -61.5 NC_005264.1 + 50026 0.67 0.616592
Target:  5'- gGCUgcGGCGUac-GUGCuCGCGCACAa -3'
miRNA:   3'- gUGGauCCGCGgucCACG-GCGCGUGU- -5'
24574 3' -61.5 NC_005264.1 + 96850 0.66 0.626517
Target:  5'- aACCgggGGuGCGCUAac-GCCGCGCGCGa -3'
miRNA:   3'- gUGGa--UC-CGCGGUccaCGGCGCGUGU- -5'
24574 3' -61.5 NC_005264.1 + 131235 0.66 0.676059
Target:  5'- uCGCCUaaGGGCGgC-GGUcGCCGC-CGCAg -3'
miRNA:   3'- -GUGGA--UCCGCgGuCCA-CGGCGcGUGU- -5'
24574 3' -61.5 NC_005264.1 + 93972 0.66 0.674087
Target:  5'- gGCCgcGGcCGCCGGGcaggucaucgucGUCGCGCACc -3'
miRNA:   3'- gUGGauCC-GCGGUCCa-----------CGGCGCGUGu -5'
24574 3' -61.5 NC_005264.1 + 58193 0.66 0.660251
Target:  5'- gGCCUGucCGCCGGGgccgcugagccacgGCCGCcGCGCGg -3'
miRNA:   3'- gUGGAUccGCGGUCCa-------------CGGCG-CGUGU- -5'
24574 3' -61.5 NC_005264.1 + 155876 0.66 0.656289
Target:  5'- aACgUGGucGCgGCCAGGUccauCCGCGCACGg -3'
miRNA:   3'- gUGgAUC--CG-CGGUCCAc---GGCGCGUGU- -5'
24574 3' -61.5 NC_005264.1 + 40856 0.66 0.636447
Target:  5'- aCGCCgaacGGCGCCAGcGUaguaagGCuCGCGCAg- -3'
miRNA:   3'- -GUGGau--CCGCGGUC-CA------CG-GCGCGUgu -5'
24574 3' -61.5 NC_005264.1 + 116768 0.66 0.636447
Target:  5'- gCGCCUggGGGCGUUuagGGGUcGCCGagcuGCGCAu -3'
miRNA:   3'- -GUGGA--UCCGCGG---UCCA-CGGCg---CGUGU- -5'
24574 3' -61.5 NC_005264.1 + 79794 0.66 0.636447
Target:  5'- gCGCgUGGGCGuCUAGGccGCCGCugauGCGCu -3'
miRNA:   3'- -GUGgAUCCGC-GGUCCa-CGGCG----CGUGu -5'
24574 3' -61.5 NC_005264.1 + 24424 0.66 0.626517
Target:  5'- aACUUcGGCGCCGGaGUGUCuuacuaucccgGCGCGCu -3'
miRNA:   3'- gUGGAuCCGCGGUC-CACGG-----------CGCGUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.