Results 61 - 80 of 82 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24575 | 3' | -57 | NC_005264.1 | + | 39573 | 0.67 | 0.848032 |
Target: 5'- gCCGGGAcUGAucuACCUuCGCGUGGCGCc -3' miRNA: 3'- -GGCUCUcGCUc--UGGAcGCGCAUCGUG- -5' |
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24575 | 3' | -57 | NC_005264.1 | + | 39485 | 0.7 | 0.663306 |
Target: 5'- gCCGccaGGGGC-AGGCCUGCGCuGUGGUggACg -3' miRNA: 3'- -GGC---UCUCGcUCUGGACGCG-CAUCG--UG- -5' |
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24575 | 3' | -57 | NC_005264.1 | + | 38829 | 0.66 | 0.870707 |
Target: 5'- aCGAGAaCGAcGACgaUGCGCG-GGCACc -3' miRNA: 3'- gGCUCUcGCU-CUGg-ACGCGCaUCGUG- -5' |
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24575 | 3' | -57 | NC_005264.1 | + | 37120 | 0.67 | 0.831953 |
Target: 5'- aCGAGGGCGAGgcggccgucucgGCCUcGCuGC-UGGCGCc -3' miRNA: 3'- gGCUCUCGCUC------------UGGA-CG-CGcAUCGUG- -5' |
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24575 | 3' | -57 | NC_005264.1 | + | 33646 | 0.74 | 0.457703 |
Target: 5'- aCGAGGGCuGGGACCaaGCGgGUGGCGg -3' miRNA: 3'- gGCUCUCG-CUCUGGa-CGCgCAUCGUg -5' |
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24575 | 3' | -57 | NC_005264.1 | + | 32275 | 1.12 | 0.001727 |
Target: 5'- gCCGAGAGCGAGACCUGCGCGUAGCACa -3' miRNA: 3'- -GGCUCUCGCUCUGGACGCGCAUCGUG- -5' |
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24575 | 3' | -57 | NC_005264.1 | + | 31460 | 0.69 | 0.742227 |
Target: 5'- aCGAGAGCGucGCCgauggGCGUGgaUGGUGCg -3' miRNA: 3'- gGCUCUCGCucUGGa----CGCGC--AUCGUG- -5' |
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24575 | 3' | -57 | NC_005264.1 | + | 30620 | 0.66 | 0.891512 |
Target: 5'- gCGGcGGCGAcgGAUCcGCGCGcAGCGCg -3' miRNA: 3'- gGCUcUCGCU--CUGGaCGCGCaUCGUG- -5' |
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24575 | 3' | -57 | NC_005264.1 | + | 27436 | 0.66 | 0.89801 |
Target: 5'- aUGAGgcuuucAGCcAGACCUGCGCcgagcGGCGCa -3' miRNA: 3'- gGCUC------UCGcUCUGGACGCGca---UCGUG- -5' |
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24575 | 3' | -57 | NC_005264.1 | + | 18548 | 0.67 | 0.823645 |
Target: 5'- gCCGGGAGaCGu-ACCccuguuUGCGCGcGGCACg -3' miRNA: 3'- -GGCUCUC-GCucUGG------ACGCGCaUCGUG- -5' |
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24575 | 3' | -57 | NC_005264.1 | + | 16743 | 0.67 | 0.840084 |
Target: 5'- cCCGAauGCGuaguccaccaAGACCcGCGCGggGGCGCg -3' miRNA: 3'- -GGCUcuCGC----------UCUGGaCGCGCa-UCGUG- -5' |
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24575 | 3' | -57 | NC_005264.1 | + | 16520 | 0.71 | 0.621975 |
Target: 5'- gCCGAGAGUcAGgauagcucuuagcGCUUGCGCGUauuucAGCGCg -3' miRNA: 3'- -GGCUCUCGcUC-------------UGGACGCGCA-----UCGUG- -5' |
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24575 | 3' | -57 | NC_005264.1 | + | 16472 | 0.66 | 0.877151 |
Target: 5'- uCCGAcGAcgcagccGCGGuGGCCUGCGgGgucgaGGCACg -3' miRNA: 3'- -GGCU-CU-------CGCU-CUGGACGCgCa----UCGUG- -5' |
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24575 | 3' | -57 | NC_005264.1 | + | 16377 | 0.67 | 0.848032 |
Target: 5'- gCUGGGGGgGAGGggaUGCcCGUGGCGCa -3' miRNA: 3'- -GGCUCUCgCUCUgg-ACGcGCAUCGUG- -5' |
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24575 | 3' | -57 | NC_005264.1 | + | 16054 | 0.72 | 0.572781 |
Target: 5'- aCGGGAGCGGcuauauGACCUGCgaacacacuGCG-AGCACu -3' miRNA: 3'- gGCUCUCGCU------CUGGACG---------CGCaUCGUG- -5' |
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24575 | 3' | -57 | NC_005264.1 | + | 10517 | 0.7 | 0.717016 |
Target: 5'- cUCGccGAGCGGGuCCUGUGCGgcgccgcccucaggGGCGCg -3' miRNA: 3'- -GGCu-CUCGCUCuGGACGCGCa-------------UCGUG- -5' |
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24575 | 3' | -57 | NC_005264.1 | + | 6314 | 0.66 | 0.877856 |
Target: 5'- gCGc-GGCGAGGCUU-CGCGUGGCGu -3' miRNA: 3'- gGCucUCGCUCUGGAcGCGCAUCGUg -5' |
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24575 | 3' | -57 | NC_005264.1 | + | 6136 | 0.69 | 0.761198 |
Target: 5'- -gGAGGGCGAGGgCcGCGCGcccgucGCGCa -3' miRNA: 3'- ggCUCUCGCUCUgGaCGCGCau----CGUG- -5' |
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24575 | 3' | -57 | NC_005264.1 | + | 4070 | 0.68 | 0.779725 |
Target: 5'- cCCGAcAGCGGGGCUguugcacggGCGgCGUcgcGGCACg -3' miRNA: 3'- -GGCUcUCGCUCUGGa--------CGC-GCA---UCGUG- -5' |
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24575 | 3' | -57 | NC_005264.1 | + | 3742 | 0.68 | 0.770522 |
Target: 5'- aCGAgGAGCGGGGCCucuUGCcGCcggGGCGCu -3' miRNA: 3'- gGCU-CUCGCUCUGG---ACG-CGca-UCGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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