miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24576 3' -57.7 NC_005264.1 + 84868 0.66 0.881519
Target:  5'- gCUCCgguACGCGCgGCGcCGGCaggucUCUUCUg -3'
miRNA:   3'- gGAGG---UGCGCG-CGUaGCCG-----AGAAGGu -5'
24576 3' -57.7 NC_005264.1 + 62844 0.66 0.881519
Target:  5'- uUUCCGCGuCGCGUuucGUCGcCUCgUCCAc -3'
miRNA:   3'- gGAGGUGC-GCGCG---UAGCcGAGaAGGU- -5'
24576 3' -57.7 NC_005264.1 + 65637 0.66 0.881519
Target:  5'- --cCCGCGCGCGCAcCGGUaa--CCAa -3'
miRNA:   3'- ggaGGUGCGCGCGUaGCCGagaaGGU- -5'
24576 3' -57.7 NC_005264.1 + 108198 0.66 0.874526
Target:  5'- aUCUCCAgGUaCGCGUCGaaguaaUCUUCCAu -3'
miRNA:   3'- -GGAGGUgCGcGCGUAGCcg----AGAAGGU- -5'
24576 3' -57.7 NC_005264.1 + 135185 0.66 0.874526
Target:  5'- uUUCUACGUGCGCcgccaaAUCGGCga-UCCu -3'
miRNA:   3'- gGAGGUGCGCGCG------UAGCCGagaAGGu -5'
24576 3' -57.7 NC_005264.1 + 9236 0.66 0.873815
Target:  5'- gCUaCCACGCGCguuucguacugaaGCAUCaGGCUag-CCAg -3'
miRNA:   3'- gGA-GGUGCGCG-------------CGUAG-CCGAgaaGGU- -5'
24576 3' -57.7 NC_005264.1 + 61252 0.66 0.867324
Target:  5'- gCUCCAgcucacgGCGCGCcUCGGCguacccguaUUCCAg -3'
miRNA:   3'- gGAGGUg------CGCGCGuAGCCGag-------AAGGU- -5'
24576 3' -57.7 NC_005264.1 + 26272 0.66 0.859919
Target:  5'- aUUCCGCgGCGCGUuccuggaucgcgAUCGGCUC--CCGc -3'
miRNA:   3'- gGAGGUG-CGCGCG------------UAGCCGAGaaGGU- -5'
24576 3' -57.7 NC_005264.1 + 123571 0.66 0.859919
Target:  5'- aCUCgAUGCGCGUAccCGGCgacccgUCCAu -3'
miRNA:   3'- gGAGgUGCGCGCGUa-GCCGaga---AGGU- -5'
24576 3' -57.7 NC_005264.1 + 134785 0.66 0.859919
Target:  5'- gCUUCCGCGCGCuuuuacccgGCGUCGcGCgcg-CCGg -3'
miRNA:   3'- -GGAGGUGCGCG---------CGUAGC-CGagaaGGU- -5'
24576 3' -57.7 NC_005264.1 + 141587 0.66 0.852317
Target:  5'- aCCUCCGCgGCGCGCAcacUCGaGC-CgucgUCAa -3'
miRNA:   3'- -GGAGGUG-CGCGCGU---AGC-CGaGaa--GGU- -5'
24576 3' -57.7 NC_005264.1 + 24634 0.66 0.852317
Target:  5'- --aCCGCGCaGCGCAUgcuuaauccccaCGGUUCUggCCAc -3'
miRNA:   3'- ggaGGUGCG-CGCGUA------------GCCGAGAa-GGU- -5'
24576 3' -57.7 NC_005264.1 + 109267 0.66 0.844523
Target:  5'- --gCCACGCgucggGCGCGUCGuaccGCgagCUUCCAu -3'
miRNA:   3'- ggaGGUGCG-----CGCGUAGC----CGa--GAAGGU- -5'
24576 3' -57.7 NC_005264.1 + 66540 0.67 0.836544
Target:  5'- --aCCGCguuGCGgGCGUCGGCgauUUCCAc -3'
miRNA:   3'- ggaGGUG---CGCgCGUAGCCGag-AAGGU- -5'
24576 3' -57.7 NC_005264.1 + 17229 0.67 0.828387
Target:  5'- uCCUCC-UGCGCGCcuuguaaucGUCGGUcgCUUCa- -3'
miRNA:   3'- -GGAGGuGCGCGCG---------UAGCCGa-GAAGgu -5'
24576 3' -57.7 NC_005264.1 + 146001 0.67 0.820058
Target:  5'- gCCUCUacgGCGUGCGCGUUaugGGCUCg---- -3'
miRNA:   3'- -GGAGG---UGCGCGCGUAG---CCGAGaaggu -5'
24576 3' -57.7 NC_005264.1 + 59719 0.67 0.820058
Target:  5'- aUCUCCG-GCGCGCAU-GGCUCg---- -3'
miRNA:   3'- -GGAGGUgCGCGCGUAgCCGAGaaggu -5'
24576 3' -57.7 NC_005264.1 + 110386 0.67 0.820058
Target:  5'- uUCUgCUACGCGCacgGCGUCGGCaggcUCgagCCAg -3'
miRNA:   3'- -GGA-GGUGCGCG---CGUAGCCG----AGaa-GGU- -5'
24576 3' -57.7 NC_005264.1 + 36932 0.67 0.811566
Target:  5'- gCUCCA-GCGgGCcgCGGUUCUuacgcuUCCGc -3'
miRNA:   3'- gGAGGUgCGCgCGuaGCCGAGA------AGGU- -5'
24576 3' -57.7 NC_005264.1 + 98429 0.67 0.811566
Target:  5'- gCCgugCC-CGCG-GCGUCGGCcuuggccgggCUUCCAg -3'
miRNA:   3'- -GGa--GGuGCGCgCGUAGCCGa---------GAAGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.