miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24576 3' -57.7 NC_005264.1 + 32402 1.1 0.001987
Target:  5'- uCCUCCACGCGCGCAUCGGCUCUUCCAa -3'
miRNA:   3'- -GGAGGUGCGCGCGUAGCCGAGAAGGU- -5'
24576 3' -57.7 NC_005264.1 + 26192 0.78 0.258975
Target:  5'- aCUCCACGCGCGUcgaGGCUCcgCCGg -3'
miRNA:   3'- gGAGGUGCGCGCGuagCCGAGaaGGU- -5'
24576 3' -57.7 NC_005264.1 + 8711 0.75 0.37897
Target:  5'- gCUCUGCGCGCGCGuggccgccguuUCGGCUCgcCCc -3'
miRNA:   3'- gGAGGUGCGCGCGU-----------AGCCGAGaaGGu -5'
24576 3' -57.7 NC_005264.1 + 57328 0.73 0.483503
Target:  5'- uCCUCUAcguCGCGCGCAUC--CUCUUCCu -3'
miRNA:   3'- -GGAGGU---GCGCGCGUAGccGAGAAGGu -5'
24576 3' -57.7 NC_005264.1 + 31230 0.71 0.590029
Target:  5'- uUCUCCGCGCGCGCccacgcgCGccGCUCccUCCAc -3'
miRNA:   3'- -GGAGGUGCGCGCGua-----GC--CGAGa-AGGU- -5'
24576 3' -57.7 NC_005264.1 + 117695 0.71 0.600006
Target:  5'- gCCUCCGCGUcgugGCGCcuGUCuGGUUCUUCg- -3'
miRNA:   3'- -GGAGGUGCG----CGCG--UAG-CCGAGAAGgu -5'
24576 3' -57.7 NC_005264.1 + 82852 0.7 0.650094
Target:  5'- uCUUCCGCGCGgccgGCAUCGGuCUCUguuugcuggCCGu -3'
miRNA:   3'- -GGAGGUGCGCg---CGUAGCC-GAGAa--------GGU- -5'
24576 3' -57.7 NC_005264.1 + 36704 0.69 0.69983
Target:  5'- uUCUgCCGCGCaaGUGcCAUCGGCUCagCCGc -3'
miRNA:   3'- -GGA-GGUGCG--CGC-GUAGCCGAGaaGGU- -5'
24576 3' -57.7 NC_005264.1 + 6998 0.69 0.709647
Target:  5'- uCCUCgGCGUGgccCGCggCGGCUCcucUCCAg -3'
miRNA:   3'- -GGAGgUGCGC---GCGuaGCCGAGa--AGGU- -5'
24576 3' -57.7 NC_005264.1 + 126025 0.69 0.709647
Target:  5'- uCCUCgGCGUGgccCGCggCGGCUCcucUCCAg -3'
miRNA:   3'- -GGAGgUGCGC---GCGuaGCCGAGa--AGGU- -5'
24576 3' -57.7 NC_005264.1 + 98927 0.69 0.709647
Target:  5'- uCUUCCACGCG-GCA-CGGCggcaaCUUUCAg -3'
miRNA:   3'- -GGAGGUGCGCgCGUaGCCGa----GAAGGU- -5'
24576 3' -57.7 NC_005264.1 + 156975 0.69 0.7194
Target:  5'- --aCCACGCuCGCGgcgCGGgUCUUCCu -3'
miRNA:   3'- ggaGGUGCGcGCGUa--GCCgAGAAGGu -5'
24576 3' -57.7 NC_005264.1 + 68903 0.69 0.7194
Target:  5'- aCUCCGCuGCGCGCGaaugUGGCgaagCUuUCCGu -3'
miRNA:   3'- gGAGGUG-CGCGCGUa---GCCGa---GA-AGGU- -5'
24576 3' -57.7 NC_005264.1 + 128411 0.68 0.738684
Target:  5'- gCCUCCucgaaagugcuCGCGgGUcUCGGCUCaUUCCc -3'
miRNA:   3'- -GGAGGu----------GCGCgCGuAGCCGAG-AAGGu -5'
24576 3' -57.7 NC_005264.1 + 95978 0.68 0.757611
Target:  5'- cUCUCCGCGCGCgaucuauuuucGCGUCgGGCgacggCgUCCGa -3'
miRNA:   3'- -GGAGGUGCGCG-----------CGUAG-CCGa----GaAGGU- -5'
24576 3' -57.7 NC_005264.1 + 157312 0.68 0.757611
Target:  5'- gCUCCGCGCGagaCGCcgCGGCUgUcaucaggCCAa -3'
miRNA:   3'- gGAGGUGCGC---GCGuaGCCGAgAa------GGU- -5'
24576 3' -57.7 NC_005264.1 + 53253 0.68 0.757611
Target:  5'- gCC-CCGCGgGCGCGUgucUGGCUUgcugUCCc -3'
miRNA:   3'- -GGaGGUGCgCGCGUA---GCCGAGa---AGGu -5'
24576 3' -57.7 NC_005264.1 + 46578 0.68 0.766919
Target:  5'- gCUUCCaagucGCGCGUGCGgaGGCUCUgUCCc -3'
miRNA:   3'- -GGAGG-----UGCGCGCGUagCCGAGA-AGGu -5'
24576 3' -57.7 NC_005264.1 + 143739 0.68 0.776113
Target:  5'- gUCUCCGCGC-CGCcgCGGUgcagUCCu -3'
miRNA:   3'- -GGAGGUGCGcGCGuaGCCGaga-AGGu -5'
24576 3' -57.7 NC_005264.1 + 154136 0.68 0.776113
Target:  5'- --gCCACGCGCGCGcagagCGaGUUCUUCa- -3'
miRNA:   3'- ggaGGUGCGCGCGUa----GC-CGAGAAGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.