Results 21 - 40 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24576 | 3' | -57.7 | NC_005264.1 | + | 128767 | 0.68 | 0.785182 |
Target: 5'- uCCUUCGCGCcaGUGCG-CGGCU--UCCAc -3' miRNA: 3'- -GGAGGUGCG--CGCGUaGCCGAgaAGGU- -5' |
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24576 | 3' | -57.7 | NC_005264.1 | + | 30716 | 0.68 | 0.785182 |
Target: 5'- aCUUUC-CGCG-GCAUCaggaGGCUCUUCCc -3' miRNA: 3'- -GGAGGuGCGCgCGUAG----CCGAGAAGGu -5' |
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24576 | 3' | -57.7 | NC_005264.1 | + | 96279 | 0.67 | 0.793232 |
Target: 5'- aCUCCAucguagacgcgcuCGUGCGCcUCGGCg--UCCGc -3' miRNA: 3'- gGAGGU-------------GCGCGCGuAGCCGagaAGGU- -5' |
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24576 | 3' | -57.7 | NC_005264.1 | + | 75208 | 0.67 | 0.802917 |
Target: 5'- gCC-CCACGCGgcUGCAUCGGCcCUgcgcggcggCCGu -3' miRNA: 3'- -GGaGGUGCGC--GCGUAGCCGaGAa--------GGU- -5' |
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24576 | 3' | -57.7 | NC_005264.1 | + | 73930 | 0.67 | 0.811566 |
Target: 5'- uCCUCCACGCGCGa--UGGCg--UCa- -3' miRNA: 3'- -GGAGGUGCGCGCguaGCCGagaAGgu -5' |
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24576 | 3' | -57.7 | NC_005264.1 | + | 36932 | 0.67 | 0.811566 |
Target: 5'- gCUCCA-GCGgGCcgCGGUUCUuacgcuUCCGc -3' miRNA: 3'- gGAGGUgCGCgCGuaGCCGAGA------AGGU- -5' |
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24576 | 3' | -57.7 | NC_005264.1 | + | 98429 | 0.67 | 0.811566 |
Target: 5'- gCCgugCC-CGCG-GCGUCGGCcuuggccgggCUUCCAg -3' miRNA: 3'- -GGa--GGuGCGCgCGUAGCCGa---------GAAGGU- -5' |
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24576 | 3' | -57.7 | NC_005264.1 | + | 110386 | 0.67 | 0.820058 |
Target: 5'- uUCUgCUACGCGCacgGCGUCGGCaggcUCgagCCAg -3' miRNA: 3'- -GGA-GGUGCGCG---CGUAGCCG----AGaa-GGU- -5' |
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24576 | 3' | -57.7 | NC_005264.1 | + | 146001 | 0.67 | 0.820058 |
Target: 5'- gCCUCUacgGCGUGCGCGUUaugGGCUCg---- -3' miRNA: 3'- -GGAGG---UGCGCGCGUAG---CCGAGaaggu -5' |
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24576 | 3' | -57.7 | NC_005264.1 | + | 59719 | 0.67 | 0.820058 |
Target: 5'- aUCUCCG-GCGCGCAU-GGCUCg---- -3' miRNA: 3'- -GGAGGUgCGCGCGUAgCCGAGaaggu -5' |
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24576 | 3' | -57.7 | NC_005264.1 | + | 17229 | 0.67 | 0.828387 |
Target: 5'- uCCUCC-UGCGCGCcuuguaaucGUCGGUcgCUUCa- -3' miRNA: 3'- -GGAGGuGCGCGCG---------UAGCCGa-GAAGgu -5' |
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24576 | 3' | -57.7 | NC_005264.1 | + | 66540 | 0.67 | 0.836544 |
Target: 5'- --aCCGCguuGCGgGCGUCGGCgauUUCCAc -3' miRNA: 3'- ggaGGUG---CGCgCGUAGCCGag-AAGGU- -5' |
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24576 | 3' | -57.7 | NC_005264.1 | + | 109267 | 0.66 | 0.844523 |
Target: 5'- --gCCACGCgucggGCGCGUCGuaccGCgagCUUCCAu -3' miRNA: 3'- ggaGGUGCG-----CGCGUAGC----CGa--GAAGGU- -5' |
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24576 | 3' | -57.7 | NC_005264.1 | + | 24634 | 0.66 | 0.852317 |
Target: 5'- --aCCGCGCaGCGCAUgcuuaauccccaCGGUUCUggCCAc -3' miRNA: 3'- ggaGGUGCG-CGCGUA------------GCCGAGAa-GGU- -5' |
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24576 | 3' | -57.7 | NC_005264.1 | + | 141587 | 0.66 | 0.852317 |
Target: 5'- aCCUCCGCgGCGCGCAcacUCGaGC-CgucgUCAa -3' miRNA: 3'- -GGAGGUG-CGCGCGU---AGC-CGaGaa--GGU- -5' |
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24576 | 3' | -57.7 | NC_005264.1 | + | 134785 | 0.66 | 0.859919 |
Target: 5'- gCUUCCGCGCGCuuuuacccgGCGUCGcGCgcg-CCGg -3' miRNA: 3'- -GGAGGUGCGCG---------CGUAGC-CGagaaGGU- -5' |
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24576 | 3' | -57.7 | NC_005264.1 | + | 123571 | 0.66 | 0.859919 |
Target: 5'- aCUCgAUGCGCGUAccCGGCgacccgUCCAu -3' miRNA: 3'- gGAGgUGCGCGCGUa-GCCGaga---AGGU- -5' |
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24576 | 3' | -57.7 | NC_005264.1 | + | 26272 | 0.66 | 0.859919 |
Target: 5'- aUUCCGCgGCGCGUuccuggaucgcgAUCGGCUC--CCGc -3' miRNA: 3'- gGAGGUG-CGCGCG------------UAGCCGAGaaGGU- -5' |
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24576 | 3' | -57.7 | NC_005264.1 | + | 61252 | 0.66 | 0.867324 |
Target: 5'- gCUCCAgcucacgGCGCGCcUCGGCguacccguaUUCCAg -3' miRNA: 3'- gGAGGUg------CGCGCGuAGCCGag-------AAGGU- -5' |
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24576 | 3' | -57.7 | NC_005264.1 | + | 9236 | 0.66 | 0.873815 |
Target: 5'- gCUaCCACGCGCguuucguacugaaGCAUCaGGCUag-CCAg -3' miRNA: 3'- gGA-GGUGCGCG-------------CGUAG-CCGAgaaGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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