miRNA display CGI


Results 41 - 45 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24576 3' -57.7 NC_005264.1 + 108198 0.66 0.874526
Target:  5'- aUCUCCAgGUaCGCGUCGaaguaaUCUUCCAu -3'
miRNA:   3'- -GGAGGUgCGcGCGUAGCcg----AGAAGGU- -5'
24576 3' -57.7 NC_005264.1 + 135185 0.66 0.874526
Target:  5'- uUUCUACGUGCGCcgccaaAUCGGCga-UCCu -3'
miRNA:   3'- gGAGGUGCGCGCG------UAGCCGagaAGGu -5'
24576 3' -57.7 NC_005264.1 + 84868 0.66 0.881519
Target:  5'- gCUCCgguACGCGCgGCGcCGGCaggucUCUUCUg -3'
miRNA:   3'- gGAGG---UGCGCG-CGUaGCCG-----AGAAGGu -5'
24576 3' -57.7 NC_005264.1 + 62844 0.66 0.881519
Target:  5'- uUUCCGCGuCGCGUuucGUCGcCUCgUCCAc -3'
miRNA:   3'- gGAGGUGC-GCGCG---UAGCcGAGaAGGU- -5'
24576 3' -57.7 NC_005264.1 + 65637 0.66 0.881519
Target:  5'- --cCCGCGCGCGCAcCGGUaa--CCAa -3'
miRNA:   3'- ggaGGUGCGCGCGUaGCCGagaaGGU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.