Results 41 - 45 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
24576 | 3' | -57.7 | NC_005264.1 | + | 108198 | 0.66 | 0.874526 |
Target: 5'- aUCUCCAgGUaCGCGUCGaaguaaUCUUCCAu -3' miRNA: 3'- -GGAGGUgCGcGCGUAGCcg----AGAAGGU- -5' |
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24576 | 3' | -57.7 | NC_005264.1 | + | 135185 | 0.66 | 0.874526 |
Target: 5'- uUUCUACGUGCGCcgccaaAUCGGCga-UCCu -3' miRNA: 3'- gGAGGUGCGCGCG------UAGCCGagaAGGu -5' |
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24576 | 3' | -57.7 | NC_005264.1 | + | 84868 | 0.66 | 0.881519 |
Target: 5'- gCUCCgguACGCGCgGCGcCGGCaggucUCUUCUg -3' miRNA: 3'- gGAGG---UGCGCG-CGUaGCCG-----AGAAGGu -5' |
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24576 | 3' | -57.7 | NC_005264.1 | + | 62844 | 0.66 | 0.881519 |
Target: 5'- uUUCCGCGuCGCGUuucGUCGcCUCgUCCAc -3' miRNA: 3'- gGAGGUGC-GCGCG---UAGCcGAGaAGGU- -5' |
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24576 | 3' | -57.7 | NC_005264.1 | + | 65637 | 0.66 | 0.881519 |
Target: 5'- --cCCGCGCGCGCAcCGGUaa--CCAa -3' miRNA: 3'- ggaGGUGCGCGCGUaGCCGagaaGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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