Results 41 - 45 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
24576 | 3' | -57.7 | NC_005264.1 | + | 31230 | 0.71 | 0.590029 |
Target: 5'- uUCUCCGCGCGCGCccacgcgCGccGCUCccUCCAc -3' miRNA: 3'- -GGAGGUGCGCGCGua-----GC--CGAGa-AGGU- -5' |
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24576 | 3' | -57.7 | NC_005264.1 | + | 57328 | 0.73 | 0.483503 |
Target: 5'- uCCUCUAcguCGCGCGCAUC--CUCUUCCu -3' miRNA: 3'- -GGAGGU---GCGCGCGUAGccGAGAAGGu -5' |
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24576 | 3' | -57.7 | NC_005264.1 | + | 8711 | 0.75 | 0.37897 |
Target: 5'- gCUCUGCGCGCGCGuggccgccguuUCGGCUCgcCCc -3' miRNA: 3'- gGAGGUGCGCGCGU-----------AGCCGAGaaGGu -5' |
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24576 | 3' | -57.7 | NC_005264.1 | + | 26192 | 0.78 | 0.258975 |
Target: 5'- aCUCCACGCGCGUcgaGGCUCcgCCGg -3' miRNA: 3'- gGAGGUGCGCGCGuagCCGAGaaGGU- -5' |
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24576 | 3' | -57.7 | NC_005264.1 | + | 32402 | 1.1 | 0.001987 |
Target: 5'- uCCUCCACGCGCGCAUCGGCUCUUCCAa -3' miRNA: 3'- -GGAGGUGCGCGCGUAGCCGAGAAGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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