miRNA display CGI


Results 21 - 40 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24576 3' -57.7 NC_005264.1 + 68903 0.69 0.7194
Target:  5'- aCUCCGCuGCGCGCGaaugUGGCgaagCUuUCCGu -3'
miRNA:   3'- gGAGGUG-CGCGCGUa---GCCGa---GA-AGGU- -5'
24576 3' -57.7 NC_005264.1 + 73930 0.67 0.811566
Target:  5'- uCCUCCACGCGCGa--UGGCg--UCa- -3'
miRNA:   3'- -GGAGGUGCGCGCguaGCCGagaAGgu -5'
24576 3' -57.7 NC_005264.1 + 75208 0.67 0.802917
Target:  5'- gCC-CCACGCGgcUGCAUCGGCcCUgcgcggcggCCGu -3'
miRNA:   3'- -GGaGGUGCGC--GCGUAGCCGaGAa--------GGU- -5'
24576 3' -57.7 NC_005264.1 + 82852 0.7 0.650094
Target:  5'- uCUUCCGCGCGgccgGCAUCGGuCUCUguuugcuggCCGu -3'
miRNA:   3'- -GGAGGUGCGCg---CGUAGCC-GAGAa--------GGU- -5'
24576 3' -57.7 NC_005264.1 + 84868 0.66 0.881519
Target:  5'- gCUCCgguACGCGCgGCGcCGGCaggucUCUUCUg -3'
miRNA:   3'- gGAGG---UGCGCG-CGUaGCCG-----AGAAGGu -5'
24576 3' -57.7 NC_005264.1 + 95978 0.68 0.757611
Target:  5'- cUCUCCGCGCGCgaucuauuuucGCGUCgGGCgacggCgUCCGa -3'
miRNA:   3'- -GGAGGUGCGCG-----------CGUAG-CCGa----GaAGGU- -5'
24576 3' -57.7 NC_005264.1 + 96279 0.67 0.793232
Target:  5'- aCUCCAucguagacgcgcuCGUGCGCcUCGGCg--UCCGc -3'
miRNA:   3'- gGAGGU-------------GCGCGCGuAGCCGagaAGGU- -5'
24576 3' -57.7 NC_005264.1 + 98429 0.67 0.811566
Target:  5'- gCCgugCC-CGCG-GCGUCGGCcuuggccgggCUUCCAg -3'
miRNA:   3'- -GGa--GGuGCGCgCGUAGCCGa---------GAAGGU- -5'
24576 3' -57.7 NC_005264.1 + 98927 0.69 0.709647
Target:  5'- uCUUCCACGCG-GCA-CGGCggcaaCUUUCAg -3'
miRNA:   3'- -GGAGGUGCGCgCGUaGCCGa----GAAGGU- -5'
24576 3' -57.7 NC_005264.1 + 108198 0.66 0.874526
Target:  5'- aUCUCCAgGUaCGCGUCGaaguaaUCUUCCAu -3'
miRNA:   3'- -GGAGGUgCGcGCGUAGCcg----AGAAGGU- -5'
24576 3' -57.7 NC_005264.1 + 109267 0.66 0.844523
Target:  5'- --gCCACGCgucggGCGCGUCGuaccGCgagCUUCCAu -3'
miRNA:   3'- ggaGGUGCG-----CGCGUAGC----CGa--GAAGGU- -5'
24576 3' -57.7 NC_005264.1 + 110386 0.67 0.820058
Target:  5'- uUCUgCUACGCGCacgGCGUCGGCaggcUCgagCCAg -3'
miRNA:   3'- -GGA-GGUGCGCG---CGUAGCCG----AGaa-GGU- -5'
24576 3' -57.7 NC_005264.1 + 117695 0.71 0.600006
Target:  5'- gCCUCCGCGUcgugGCGCcuGUCuGGUUCUUCg- -3'
miRNA:   3'- -GGAGGUGCG----CGCG--UAG-CCGAGAAGgu -5'
24576 3' -57.7 NC_005264.1 + 123571 0.66 0.859919
Target:  5'- aCUCgAUGCGCGUAccCGGCgacccgUCCAu -3'
miRNA:   3'- gGAGgUGCGCGCGUa-GCCGaga---AGGU- -5'
24576 3' -57.7 NC_005264.1 + 126025 0.69 0.709647
Target:  5'- uCCUCgGCGUGgccCGCggCGGCUCcucUCCAg -3'
miRNA:   3'- -GGAGgUGCGC---GCGuaGCCGAGa--AGGU- -5'
24576 3' -57.7 NC_005264.1 + 128411 0.68 0.738684
Target:  5'- gCCUCCucgaaagugcuCGCGgGUcUCGGCUCaUUCCc -3'
miRNA:   3'- -GGAGGu----------GCGCgCGuAGCCGAG-AAGGu -5'
24576 3' -57.7 NC_005264.1 + 128767 0.68 0.785182
Target:  5'- uCCUUCGCGCcaGUGCG-CGGCU--UCCAc -3'
miRNA:   3'- -GGAGGUGCG--CGCGUaGCCGAgaAGGU- -5'
24576 3' -57.7 NC_005264.1 + 134785 0.66 0.859919
Target:  5'- gCUUCCGCGCGCuuuuacccgGCGUCGcGCgcg-CCGg -3'
miRNA:   3'- -GGAGGUGCGCG---------CGUAGC-CGagaaGGU- -5'
24576 3' -57.7 NC_005264.1 + 135185 0.66 0.874526
Target:  5'- uUUCUACGUGCGCcgccaaAUCGGCga-UCCu -3'
miRNA:   3'- gGAGGUGCGCGCG------UAGCCGagaAGGu -5'
24576 3' -57.7 NC_005264.1 + 141587 0.66 0.852317
Target:  5'- aCCUCCGCgGCGCGCAcacUCGaGC-CgucgUCAa -3'
miRNA:   3'- -GGAGGUG-CGCGCGU---AGC-CGaGaa--GGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.