Results 41 - 45 of 45 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24576 | 3' | -57.7 | NC_005264.1 | + | 95978 | 0.68 | 0.757611 |
Target: 5'- cUCUCCGCGCGCgaucuauuuucGCGUCgGGCgacggCgUCCGa -3' miRNA: 3'- -GGAGGUGCGCG-----------CGUAG-CCGa----GaAGGU- -5' |
|||||||
24576 | 3' | -57.7 | NC_005264.1 | + | 157312 | 0.68 | 0.757611 |
Target: 5'- gCUCCGCGCGagaCGCcgCGGCUgUcaucaggCCAa -3' miRNA: 3'- gGAGGUGCGC---GCGuaGCCGAgAa------GGU- -5' |
|||||||
24576 | 3' | -57.7 | NC_005264.1 | + | 143739 | 0.68 | 0.776113 |
Target: 5'- gUCUCCGCGC-CGCcgCGGUgcagUCCu -3' miRNA: 3'- -GGAGGUGCGcGCGuaGCCGaga-AGGu -5' |
|||||||
24576 | 3' | -57.7 | NC_005264.1 | + | 154136 | 0.68 | 0.776113 |
Target: 5'- --gCCACGCGCGCGcagagCGaGUUCUUCa- -3' miRNA: 3'- ggaGGUGCGCGCGUa----GC-CGAGAAGgu -5' |
|||||||
24576 | 3' | -57.7 | NC_005264.1 | + | 84868 | 0.66 | 0.881519 |
Target: 5'- gCUCCgguACGCGCgGCGcCGGCaggucUCUUCUg -3' miRNA: 3'- gGAGG---UGCGCG-CGUaGCCG-----AGAAGGu -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home