Results 1 - 20 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24576 | 3' | -57.7 | NC_005264.1 | + | 84868 | 0.66 | 0.881519 |
Target: 5'- gCUCCgguACGCGCgGCGcCGGCaggucUCUUCUg -3' miRNA: 3'- gGAGG---UGCGCG-CGUaGCCG-----AGAAGGu -5' |
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24576 | 3' | -57.7 | NC_005264.1 | + | 6998 | 0.69 | 0.709647 |
Target: 5'- uCCUCgGCGUGgccCGCggCGGCUCcucUCCAg -3' miRNA: 3'- -GGAGgUGCGC---GCGuaGCCGAGa--AGGU- -5' |
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24576 | 3' | -57.7 | NC_005264.1 | + | 156975 | 0.69 | 0.7194 |
Target: 5'- --aCCACGCuCGCGgcgCGGgUCUUCCu -3' miRNA: 3'- ggaGGUGCGcGCGUa--GCCgAGAAGGu -5' |
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24576 | 3' | -57.7 | NC_005264.1 | + | 68903 | 0.69 | 0.7194 |
Target: 5'- aCUCCGCuGCGCGCGaaugUGGCgaagCUuUCCGu -3' miRNA: 3'- gGAGGUG-CGCGCGUa---GCCGa---GA-AGGU- -5' |
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24576 | 3' | -57.7 | NC_005264.1 | + | 128411 | 0.68 | 0.738684 |
Target: 5'- gCCUCCucgaaagugcuCGCGgGUcUCGGCUCaUUCCc -3' miRNA: 3'- -GGAGGu----------GCGCgCGuAGCCGAG-AAGGu -5' |
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24576 | 3' | -57.7 | NC_005264.1 | + | 95978 | 0.68 | 0.757611 |
Target: 5'- cUCUCCGCGCGCgaucuauuuucGCGUCgGGCgacggCgUCCGa -3' miRNA: 3'- -GGAGGUGCGCG-----------CGUAG-CCGa----GaAGGU- -5' |
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24576 | 3' | -57.7 | NC_005264.1 | + | 157312 | 0.68 | 0.757611 |
Target: 5'- gCUCCGCGCGagaCGCcgCGGCUgUcaucaggCCAa -3' miRNA: 3'- gGAGGUGCGC---GCGuaGCCGAgAa------GGU- -5' |
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24576 | 3' | -57.7 | NC_005264.1 | + | 143739 | 0.68 | 0.776113 |
Target: 5'- gUCUCCGCGC-CGCcgCGGUgcagUCCu -3' miRNA: 3'- -GGAGGUGCGcGCGuaGCCGaga-AGGu -5' |
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24576 | 3' | -57.7 | NC_005264.1 | + | 154136 | 0.68 | 0.776113 |
Target: 5'- --gCCACGCGCGCGcagagCGaGUUCUUCa- -3' miRNA: 3'- ggaGGUGCGCGCGUa----GC-CGAGAAGgu -5' |
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24576 | 3' | -57.7 | NC_005264.1 | + | 128767 | 0.68 | 0.785182 |
Target: 5'- uCCUUCGCGCcaGUGCG-CGGCU--UCCAc -3' miRNA: 3'- -GGAGGUGCG--CGCGUaGCCGAgaAGGU- -5' |
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24576 | 3' | -57.7 | NC_005264.1 | + | 73930 | 0.67 | 0.811566 |
Target: 5'- uCCUCCACGCGCGa--UGGCg--UCa- -3' miRNA: 3'- -GGAGGUGCGCGCguaGCCGagaAGgu -5' |
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24576 | 3' | -57.7 | NC_005264.1 | + | 135185 | 0.66 | 0.874526 |
Target: 5'- uUUCUACGUGCGCcgccaaAUCGGCga-UCCu -3' miRNA: 3'- gGAGGUGCGCGCG------UAGCCGagaAGGu -5' |
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24576 | 3' | -57.7 | NC_005264.1 | + | 26272 | 0.66 | 0.859919 |
Target: 5'- aUUCCGCgGCGCGUuccuggaucgcgAUCGGCUC--CCGc -3' miRNA: 3'- gGAGGUG-CGCGCG------------UAGCCGAGaaGGU- -5' |
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24576 | 3' | -57.7 | NC_005264.1 | + | 134785 | 0.66 | 0.859919 |
Target: 5'- gCUUCCGCGCGCuuuuacccgGCGUCGcGCgcg-CCGg -3' miRNA: 3'- -GGAGGUGCGCG---------CGUAGC-CGagaaGGU- -5' |
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24576 | 3' | -57.7 | NC_005264.1 | + | 123571 | 0.66 | 0.859919 |
Target: 5'- aCUCgAUGCGCGUAccCGGCgacccgUCCAu -3' miRNA: 3'- gGAGgUGCGCGCGUa-GCCGaga---AGGU- -5' |
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24576 | 3' | -57.7 | NC_005264.1 | + | 24634 | 0.66 | 0.852317 |
Target: 5'- --aCCGCGCaGCGCAUgcuuaauccccaCGGUUCUggCCAc -3' miRNA: 3'- ggaGGUGCG-CGCGUA------------GCCGAGAa-GGU- -5' |
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24576 | 3' | -57.7 | NC_005264.1 | + | 59719 | 0.67 | 0.820058 |
Target: 5'- aUCUCCG-GCGCGCAU-GGCUCg---- -3' miRNA: 3'- -GGAGGUgCGCGCGUAgCCGAGaaggu -5' |
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24576 | 3' | -57.7 | NC_005264.1 | + | 98429 | 0.67 | 0.811566 |
Target: 5'- gCCgugCC-CGCG-GCGUCGGCcuuggccgggCUUCCAg -3' miRNA: 3'- -GGa--GGuGCGCgCGUAGCCGa---------GAAGGU- -5' |
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24576 | 3' | -57.7 | NC_005264.1 | + | 65637 | 0.66 | 0.881519 |
Target: 5'- --cCCGCGCGCGCAcCGGUaa--CCAa -3' miRNA: 3'- ggaGGUGCGCGCGUaGCCGagaaGGU- -5' |
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24576 | 3' | -57.7 | NC_005264.1 | + | 26192 | 0.78 | 0.258975 |
Target: 5'- aCUCCACGCGCGUcgaGGCUCcgCCGg -3' miRNA: 3'- gGAGGUGCGCGCGuagCCGAGaaGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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