miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24576 5' -56.9 NC_005264.1 + 98308 0.66 0.899045
Target:  5'- cGCGGAACCccccucCGCGGCGGcGCg-- -3'
miRNA:   3'- aUGCCUUGGccau--GCGCCGCC-UGaag -5'
24576 5' -56.9 NC_005264.1 + 125479 0.66 0.899045
Target:  5'- gGCGGAGaacuccUCGGcgGCGCGGCGaACgUCg -3'
miRNA:   3'- aUGCCUU------GGCCa-UGCGCCGCcUGaAG- -5'
24576 5' -56.9 NC_005264.1 + 6452 0.66 0.899045
Target:  5'- gGCGGAGaacuccUCGGcgGCGCGGCGaACgUCg -3'
miRNA:   3'- aUGCCUU------GGCCa-UGCGCCGCcUGaAG- -5'
24576 5' -56.9 NC_005264.1 + 117828 0.66 0.899045
Target:  5'- aACGGGuucgaGGggagGCGCGGCGGAgUg- -3'
miRNA:   3'- aUGCCUugg--CCa---UGCGCCGCCUgAag -5'
24576 5' -56.9 NC_005264.1 + 95757 0.66 0.899045
Target:  5'- aUGgGGGAUCuGUACGCGGCGuGCg-- -3'
miRNA:   3'- -AUgCCUUGGcCAUGCGCCGCcUGaag -5'
24576 5' -56.9 NC_005264.1 + 83253 0.66 0.89256
Target:  5'- cGCuGAugCGcugGCGCGGCGaACUUCa -3'
miRNA:   3'- aUGcCUugGCca-UGCGCCGCcUGAAG- -5'
24576 5' -56.9 NC_005264.1 + 148286 0.66 0.89256
Target:  5'- gGCGGGagauucuggagACCGcgcgcGUGCGCGcCGGugUUCg -3'
miRNA:   3'- aUGCCU-----------UGGC-----CAUGCGCcGCCugAAG- -5'
24576 5' -56.9 NC_005264.1 + 53978 0.66 0.89256
Target:  5'- -uUGGcGCCGGaACgGCGGCGaGACUg- -3'
miRNA:   3'- auGCCuUGGCCaUG-CGCCGC-CUGAag -5'
24576 5' -56.9 NC_005264.1 + 75214 0.66 0.885852
Target:  5'- cGCGGcugcAUCGGcccUGCGCGGCGGcCgUCu -3'
miRNA:   3'- aUGCCu---UGGCC---AUGCGCCGCCuGaAG- -5'
24576 5' -56.9 NC_005264.1 + 11635 0.66 0.878924
Target:  5'- -gUGGAA-CGGUaucaGCGCGGCaGGGCUg- -3'
miRNA:   3'- auGCCUUgGCCA----UGCGCCG-CCUGAag -5'
24576 5' -56.9 NC_005264.1 + 102226 0.66 0.878924
Target:  5'- cUGCGcGAGCCGGcUGcCGCGGCauacgagaagGGGCUc- -3'
miRNA:   3'- -AUGC-CUUGGCC-AU-GCGCCG----------CCUGAag -5'
24576 5' -56.9 NC_005264.1 + 120642 0.66 0.871781
Target:  5'- aUACGGGacGCCGGUggGCGCGGCu------ -3'
miRNA:   3'- -AUGCCU--UGGCCA--UGCGCCGccugaag -5'
24576 5' -56.9 NC_005264.1 + 1615 0.66 0.871781
Target:  5'- aUACGGGacGCCGGUggGCGCGGCu------ -3'
miRNA:   3'- -AUGCCU--UGGCCA--UGCGCCGccugaag -5'
24576 5' -56.9 NC_005264.1 + 79915 0.66 0.864427
Target:  5'- cGCGuGGCCGacGUcUGCGGCGGACUcCa -3'
miRNA:   3'- aUGCcUUGGC--CAuGCGCCGCCUGAaG- -5'
24576 5' -56.9 NC_005264.1 + 71832 0.66 0.863681
Target:  5'- cGCGGggUCGcgaauaacgacgcGUcGCgGCGGCGGugUUCc -3'
miRNA:   3'- aUGCCuuGGC-------------CA-UG-CGCCGCCugAAG- -5'
24576 5' -56.9 NC_005264.1 + 146755 0.67 0.859917
Target:  5'- gGCGGAcCCGGcaacagcaagcgccGCGCGGCGGuucUCg -3'
miRNA:   3'- aUGCCUuGGCCa-------------UGCGCCGCCugaAG- -5'
24576 5' -56.9 NC_005264.1 + 156602 0.67 0.856869
Target:  5'- gACGGAGgCGGcaagucuCGCGGCGGccGCggCg -3'
miRNA:   3'- aUGCCUUgGCCau-----GCGCCGCC--UGaaG- -5'
24576 5' -56.9 NC_005264.1 + 37575 0.67 0.856869
Target:  5'- gACGGAGgCGGcaagucuCGCGGCGGccGCggCg -3'
miRNA:   3'- aUGCCUUgGCCau-----GCGCCGCC--UGaaG- -5'
24576 5' -56.9 NC_005264.1 + 96260 0.67 0.856869
Target:  5'- aGCGaGAGCCuGUACcagcaggugGCGGCGGAgCUUg -3'
miRNA:   3'- aUGC-CUUGGcCAUG---------CGCCGCCU-GAAg -5'
24576 5' -56.9 NC_005264.1 + 129529 0.67 0.856869
Target:  5'- gACGGAACCacUGCGgGcGUGGGCUUa -3'
miRNA:   3'- aUGCCUUGGccAUGCgC-CGCCUGAAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.