Results 21 - 40 of 65 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
24576 | 5' | -56.9 | NC_005264.1 | + | 156602 | 0.67 | 0.856869 |
Target: 5'- gACGGAGgCGGcaagucuCGCGGCGGccGCggCg -3' miRNA: 3'- aUGCCUUgGCCau-----GCGCCGCC--UGaaG- -5' |
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24576 | 5' | -56.9 | NC_005264.1 | + | 37575 | 0.67 | 0.856869 |
Target: 5'- gACGGAGgCGGcaagucuCGCGGCGGccGCggCg -3' miRNA: 3'- aUGCCUUgGCCau-----GCGCCGCC--UGaaG- -5' |
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24576 | 5' | -56.9 | NC_005264.1 | + | 13571 | 0.67 | 0.849112 |
Target: 5'- gGCGGGACCGGggaaG-GGCGGAa--- -3' miRNA: 3'- aUGCCUUGGCCaug-CgCCGCCUgaag -5' |
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24576 | 5' | -56.9 | NC_005264.1 | + | 129529 | 0.67 | 0.856869 |
Target: 5'- gACGGAACCacUGCGgGcGUGGGCUUa -3' miRNA: 3'- aUGCCUUGGccAUGCgC-CGCCUGAAg -5' |
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24576 | 5' | -56.9 | NC_005264.1 | + | 103130 | 0.67 | 0.833027 |
Target: 5'- cGCGGuAGCCGccgGCGCGGCGcGCggCg -3' miRNA: 3'- aUGCC-UUGGCca-UGCGCCGCcUGaaG- -5' |
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24576 | 5' | -56.9 | NC_005264.1 | + | 71648 | 0.67 | 0.833027 |
Target: 5'- gUGCGcGAACCuGUGCGUGGCGuACa-- -3' miRNA: 3'- -AUGC-CUUGGcCAUGCGCCGCcUGaag -5' |
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24576 | 5' | -56.9 | NC_005264.1 | + | 3748 | 0.67 | 0.824712 |
Target: 5'- aGCGGGgccucuugccGCCGGgGCGCuGCGGGCc-- -3' miRNA: 3'- aUGCCU----------UGGCCaUGCGcCGCCUGaag -5' |
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24576 | 5' | -56.9 | NC_005264.1 | + | 16569 | 0.68 | 0.807576 |
Target: 5'- gGCGGcGCCGGg--GCGGCGGcGCa-- -3' miRNA: 3'- aUGCCuUGGCCaugCGCCGCC-UGaag -5' |
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24576 | 5' | -56.9 | NC_005264.1 | + | 135724 | 0.68 | 0.780726 |
Target: 5'- aACGGAauaccaagaaGCCGGggaaacaGCuGCGGCGGAUUaUCa -3' miRNA: 3'- aUGCCU----------UGGCCa------UG-CGCCGCCUGA-AG- -5' |
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24576 | 5' | -56.9 | NC_005264.1 | + | 121491 | 0.68 | 0.771504 |
Target: 5'- -cCGGAGCUGGgccuuCGCGGCuG-CUUCg -3' miRNA: 3'- auGCCUUGGCCau---GCGCCGcCuGAAG- -5' |
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24576 | 5' | -56.9 | NC_005264.1 | + | 50322 | 0.68 | 0.771504 |
Target: 5'- -cUGGAGCCGcgaGUACGCGGCGucGACc-- -3' miRNA: 3'- auGCCUUGGC---CAUGCGCCGC--CUGaag -5' |
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24576 | 5' | -56.9 | NC_005264.1 | + | 137939 | 0.68 | 0.816226 |
Target: 5'- -gUGGuGCCGGUAuCGuuGCGcGACUUCg -3' miRNA: 3'- auGCCuUGGCCAU-GCgcCGC-CUGAAG- -5' |
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24576 | 5' | -56.9 | NC_005264.1 | + | 55806 | 0.68 | 0.810188 |
Target: 5'- cUACGaGAgcaacucaacauucaGCCGGUggcgGCGCGGCugacugggccucaGGGCUUCu -3' miRNA: 3'- -AUGC-CU---------------UGGCCA----UGCGCCG-------------CCUGAAG- -5' |
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24576 | 5' | -56.9 | NC_005264.1 | + | 2464 | 0.68 | 0.771504 |
Target: 5'- -cCGGAGCUGGgccuuCGCGGCuG-CUUCg -3' miRNA: 3'- auGCCUUGGCCau---GCGCCGcCuGAAG- -5' |
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24576 | 5' | -56.9 | NC_005264.1 | + | 27662 | 0.68 | 0.771504 |
Target: 5'- cGCGGcgcucgGACCgaGGUACGCGGCuGGCcUCu -3' miRNA: 3'- aUGCC------UUGG--CCAUGCGCCGcCUGaAG- -5' |
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24576 | 5' | -56.9 | NC_005264.1 | + | 149429 | 0.69 | 0.723745 |
Target: 5'- gGCGGucgcgcGCCGGUGCggagagcuGCGGCGGAg--- -3' miRNA: 3'- aUGCCu-----UGGCCAUG--------CGCCGCCUgaag -5' |
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24576 | 5' | -56.9 | NC_005264.1 | + | 30402 | 0.69 | 0.723745 |
Target: 5'- gGCGGucgcgcGCCGGUGCggagagcuGCGGCGGAg--- -3' miRNA: 3'- aUGCCu-----UGGCCAUG--------CGCCGCCUgaag -5' |
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24576 | 5' | -56.9 | NC_005264.1 | + | 43231 | 0.69 | 0.713926 |
Target: 5'- gGCGGGGCUGG--CG-GGCGGACUa- -3' miRNA: 3'- aUGCCUUGGCCauGCgCCGCCUGAag -5' |
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24576 | 5' | -56.9 | NC_005264.1 | + | 97205 | 0.69 | 0.743142 |
Target: 5'- -uUGGuuACCGGUGCGCGcGCGGGu--- -3' miRNA: 3'- auGCCu-UGGCCAUGCGC-CGCCUgaag -5' |
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24576 | 5' | -56.9 | NC_005264.1 | + | 35782 | 0.69 | 0.71294 |
Target: 5'- gGCGGAggGCgCGGUGgcgccguCGUGGCGGGCg-- -3' miRNA: 3'- aUGCCU--UG-GCCAU-------GCGCCGCCUGaag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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