Results 1 - 20 of 65 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24576 | 5' | -56.9 | NC_005264.1 | + | 32437 | 1.07 | 0.003362 |
Target: 5'- cUACGGAACCGGUACGCGGCGGACUUCu -3' miRNA: 3'- -AUGCCUUGGCCAUGCGCCGCCUGAAG- -5' |
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24576 | 5' | -56.9 | NC_005264.1 | + | 122429 | 0.8 | 0.208223 |
Target: 5'- cGCGGggUCGGUGCGCGGgGGAg--- -3' miRNA: 3'- aUGCCuuGGCCAUGCGCCgCCUgaag -5' |
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24576 | 5' | -56.9 | NC_005264.1 | + | 3402 | 0.8 | 0.208223 |
Target: 5'- cGCGGggUCGGUGCGCGGgGGAg--- -3' miRNA: 3'- aUGCCuuGGCCAUGCGCCgCCUgaag -5' |
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24576 | 5' | -56.9 | NC_005264.1 | + | 26497 | 0.73 | 0.488294 |
Target: 5'- gUGCGGcGCCGaaccagcuucuacgcCGCGGCGGGCUUCa -3' miRNA: 3'- -AUGCCuUGGCcau------------GCGCCGCCUGAAG- -5' |
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24576 | 5' | -56.9 | NC_005264.1 | + | 13598 | 0.73 | 0.485467 |
Target: 5'- gACGGGACCGGcgauCGCGGUcgGGACg-- -3' miRNA: 3'- aUGCCUUGGCCau--GCGCCG--CCUGaag -5' |
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24576 | 5' | -56.9 | NC_005264.1 | + | 36246 | 0.73 | 0.504457 |
Target: 5'- gGCGGAGCCGc-ACGUGGCGGAag-Cg -3' miRNA: 3'- aUGCCUUGGCcaUGCGCCGCCUgaaG- -5' |
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24576 | 5' | -56.9 | NC_005264.1 | + | 132625 | 0.73 | 0.485467 |
Target: 5'- gACGGGACCGGcgauCGCGGUcgGGACg-- -3' miRNA: 3'- aUGCCUUGGCCau--GCGCCG--CCUGaag -5' |
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24576 | 5' | -56.9 | NC_005264.1 | + | 155273 | 0.73 | 0.504457 |
Target: 5'- gGCGGAGCCGc-ACGUGGCGGAag-Cg -3' miRNA: 3'- aUGCCUUGGCcaUGCGCCGCCUgaaG- -5' |
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24576 | 5' | -56.9 | NC_005264.1 | + | 2869 | 0.72 | 0.573136 |
Target: 5'- cUGCGGcugcgaucGACCGGgGCGCGGCGcGGCg-- -3' miRNA: 3'- -AUGCC--------UUGGCCaUGCGCCGC-CUGaag -5' |
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24576 | 5' | -56.9 | NC_005264.1 | + | 121895 | 0.72 | 0.573136 |
Target: 5'- cUGCGGcugcgaucGACCGGgGCGCGGCGcGGCg-- -3' miRNA: 3'- -AUGCC--------UUGGCCaUGCGCCGC-CUGaag -5' |
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24576 | 5' | -56.9 | NC_005264.1 | + | 158873 | 0.72 | 0.573136 |
Target: 5'- gGCGGuaaAGCCGGccgGCGCGGCcaGGACgUUCc -3' miRNA: 3'- aUGCC---UUGGCCa--UGCGCCG--CCUG-AAG- -5' |
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24576 | 5' | -56.9 | NC_005264.1 | + | 39847 | 0.72 | 0.573136 |
Target: 5'- gGCGGuaaAGCCGGccgGCGCGGCcaGGACgUUCc -3' miRNA: 3'- aUGCC---UUGGCCa--UGCGCCG--CCUG-AAG- -5' |
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24576 | 5' | -56.9 | NC_005264.1 | + | 83718 | 0.71 | 0.613402 |
Target: 5'- gGCGGcGGCUaGGUACGCGGCGG-Ca-- -3' miRNA: 3'- aUGCC-UUGG-CCAUGCGCCGCCuGaag -5' |
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24576 | 5' | -56.9 | NC_005264.1 | + | 24873 | 0.71 | 0.613402 |
Target: 5'- -cCGGAGCCGGg--GCGGCacgaGGCUUCg -3' miRNA: 3'- auGCCUUGGCCaugCGCCGc---CUGAAG- -5' |
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24576 | 5' | -56.9 | NC_005264.1 | + | 159384 | 0.71 | 0.623521 |
Target: 5'- aUGCGGcACCGGgcgccacGgGCGGCGGACc-- -3' miRNA: 3'- -AUGCCuUGGCCa------UgCGCCGCCUGaag -5' |
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24576 | 5' | -56.9 | NC_005264.1 | + | 51772 | 0.7 | 0.674055 |
Target: 5'- aGgGGAGCUc--GCGCGGCGGcACUUCg -3' miRNA: 3'- aUgCCUUGGccaUGCGCCGCC-UGAAG- -5' |
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24576 | 5' | -56.9 | NC_005264.1 | + | 2614 | 0.7 | 0.704039 |
Target: 5'- gGCGcGAGCCGaGcagGCGgGGCGGAguCUUCu -3' miRNA: 3'- aUGC-CUUGGC-Ca--UGCgCCGCCU--GAAG- -5' |
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24576 | 5' | -56.9 | NC_005264.1 | + | 96056 | 0.7 | 0.704039 |
Target: 5'- gGCGGGACCGuGUuaggaACGUGGgaGGACgagUCa -3' miRNA: 3'- aUGCCUUGGC-CA-----UGCGCCg-CCUGa--AG- -5' |
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24576 | 5' | -56.9 | NC_005264.1 | + | 3684 | 0.7 | 0.678076 |
Target: 5'- gUGCGGGGCCuGGcgcggaaaggGCGCacaguacuugccgcgGGCGGGCUUCu -3' miRNA: 3'- -AUGCCUUGG-CCa---------UGCG---------------CCGCCUGAAG- -5' |
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24576 | 5' | -56.9 | NC_005264.1 | + | 121641 | 0.7 | 0.704039 |
Target: 5'- gGCGcGAGCCGaGcagGCGgGGCGGAguCUUCu -3' miRNA: 3'- aUGC-CUUGGC-Ca--UGCgCCGCCU--GAAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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