miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24576 5' -56.9 NC_005264.1 + 807 0.69 0.713926
Target:  5'- gUACGGc-UgGGUGCGCGGCcGGCUUUa -3'
miRNA:   3'- -AUGCCuuGgCCAUGCGCCGcCUGAAG- -5'
24576 5' -56.9 NC_005264.1 + 1615 0.66 0.871781
Target:  5'- aUACGGGacGCCGGUggGCGCGGCu------ -3'
miRNA:   3'- -AUGCCU--UGGCCA--UGCGCCGccugaag -5'
24576 5' -56.9 NC_005264.1 + 2464 0.68 0.771504
Target:  5'- -cCGGAGCUGGgccuuCGCGGCuG-CUUCg -3'
miRNA:   3'- auGCCUUGGCCau---GCGCCGcCuGAAG- -5'
24576 5' -56.9 NC_005264.1 + 2614 0.7 0.704039
Target:  5'- gGCGcGAGCCGaGcagGCGgGGCGGAguCUUCu -3'
miRNA:   3'- aUGC-CUUGGC-Ca--UGCgCCGCCU--GAAG- -5'
24576 5' -56.9 NC_005264.1 + 2869 0.72 0.573136
Target:  5'- cUGCGGcugcgaucGACCGGgGCGCGGCGcGGCg-- -3'
miRNA:   3'- -AUGCC--------UUGGCCaUGCGCCGC-CUGaag -5'
24576 5' -56.9 NC_005264.1 + 3402 0.8 0.208223
Target:  5'- cGCGGggUCGGUGCGCGGgGGAg--- -3'
miRNA:   3'- aUGCCuuGGCCAUGCGCCgCCUgaag -5'
24576 5' -56.9 NC_005264.1 + 3684 0.7 0.678076
Target:  5'- gUGCGGGGCCuGGcgcggaaaggGCGCacaguacuugccgcgGGCGGGCUUCu -3'
miRNA:   3'- -AUGCCUUGG-CCa---------UGCG---------------CCGCCUGAAG- -5'
24576 5' -56.9 NC_005264.1 + 3748 0.67 0.824712
Target:  5'- aGCGGGgccucuugccGCCGGgGCGCuGCGGGCc-- -3'
miRNA:   3'- aUGCCU----------UGGCCaUGCGcCGCCUGaag -5'
24576 5' -56.9 NC_005264.1 + 6452 0.66 0.899045
Target:  5'- gGCGGAGaacuccUCGGcgGCGCGGCGaACgUCg -3'
miRNA:   3'- aUGCCUU------GGCCa-UGCGCCGCcUGaAG- -5'
24576 5' -56.9 NC_005264.1 + 11635 0.66 0.878924
Target:  5'- -gUGGAA-CGGUaucaGCGCGGCaGGGCUg- -3'
miRNA:   3'- auGCCUUgGCCA----UGCGCCG-CCUGAag -5'
24576 5' -56.9 NC_005264.1 + 13571 0.67 0.849112
Target:  5'- gGCGGGACCGGggaaG-GGCGGAa--- -3'
miRNA:   3'- aUGCCUUGGCCaug-CgCCGCCUgaag -5'
24576 5' -56.9 NC_005264.1 + 13598 0.73 0.485467
Target:  5'- gACGGGACCGGcgauCGCGGUcgGGACg-- -3'
miRNA:   3'- aUGCCUUGGCCau--GCGCCG--CCUGaag -5'
24576 5' -56.9 NC_005264.1 + 16569 0.68 0.807576
Target:  5'- gGCGGcGCCGGg--GCGGCGGcGCa-- -3'
miRNA:   3'- aUGCCuUGGCCaugCGCCGCC-UGaag -5'
24576 5' -56.9 NC_005264.1 + 24873 0.71 0.613402
Target:  5'- -cCGGAGCCGGg--GCGGCacgaGGCUUCg -3'
miRNA:   3'- auGCCUUGGCCaugCGCCGc---CUGAAG- -5'
24576 5' -56.9 NC_005264.1 + 26497 0.73 0.488294
Target:  5'- gUGCGGcGCCGaaccagcuucuacgcCGCGGCGGGCUUCa -3'
miRNA:   3'- -AUGCCuUGGCcau------------GCGCCGCCUGAAG- -5'
24576 5' -56.9 NC_005264.1 + 27662 0.68 0.771504
Target:  5'- cGCGGcgcucgGACCgaGGUACGCGGCuGGCcUCu -3'
miRNA:   3'- aUGCC------UUGG--CCAUGCGCCGcCUGaAG- -5'
24576 5' -56.9 NC_005264.1 + 30402 0.69 0.723745
Target:  5'- gGCGGucgcgcGCCGGUGCggagagcuGCGGCGGAg--- -3'
miRNA:   3'- aUGCCu-----UGGCCAUG--------CGCCGCCUgaag -5'
24576 5' -56.9 NC_005264.1 + 32437 1.07 0.003362
Target:  5'- cUACGGAACCGGUACGCGGCGGACUUCu -3'
miRNA:   3'- -AUGCCUUGGCCAUGCGCCGCCUGAAG- -5'
24576 5' -56.9 NC_005264.1 + 35782 0.69 0.71294
Target:  5'- gGCGGAggGCgCGGUGgcgccguCGUGGCGGGCg-- -3'
miRNA:   3'- aUGCCU--UG-GCCAU-------GCGCCGCCUGaag -5'
24576 5' -56.9 NC_005264.1 + 36246 0.73 0.504457
Target:  5'- gGCGGAGCCGc-ACGUGGCGGAag-Cg -3'
miRNA:   3'- aUGCCUUGGCcaUGCGCCGCCUgaaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.