miRNA display CGI


Results 21 - 40 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24576 5' -56.9 NC_005264.1 + 37575 0.67 0.856869
Target:  5'- gACGGAGgCGGcaagucuCGCGGCGGccGCggCg -3'
miRNA:   3'- aUGCCUUgGCCau-----GCGCCGCC--UGaaG- -5'
24576 5' -56.9 NC_005264.1 + 39847 0.72 0.573136
Target:  5'- gGCGGuaaAGCCGGccgGCGCGGCcaGGACgUUCc -3'
miRNA:   3'- aUGCC---UUGGCCa--UGCGCCG--CCUG-AAG- -5'
24576 5' -56.9 NC_005264.1 + 43231 0.69 0.713926
Target:  5'- gGCGGGGCUGG--CG-GGCGGACUa- -3'
miRNA:   3'- aUGCCUUGGCCauGCgCCGCCUGAag -5'
24576 5' -56.9 NC_005264.1 + 50322 0.68 0.771504
Target:  5'- -cUGGAGCCGcgaGUACGCGGCGucGACc-- -3'
miRNA:   3'- auGCCUUGGC---CAUGCGCCGC--CUGaag -5'
24576 5' -56.9 NC_005264.1 + 51772 0.7 0.674055
Target:  5'- aGgGGAGCUc--GCGCGGCGGcACUUCg -3'
miRNA:   3'- aUgCCUUGGccaUGCGCCGCC-UGAAG- -5'
24576 5' -56.9 NC_005264.1 + 53978 0.66 0.89256
Target:  5'- -uUGGcGCCGGaACgGCGGCGaGACUg- -3'
miRNA:   3'- auGCCuUGGCCaUG-CGCCGC-CUGAag -5'
24576 5' -56.9 NC_005264.1 + 55806 0.68 0.810188
Target:  5'- cUACGaGAgcaacucaacauucaGCCGGUggcgGCGCGGCugacugggccucaGGGCUUCu -3'
miRNA:   3'- -AUGC-CU---------------UGGCCA----UGCGCCG-------------CCUGAAG- -5'
24576 5' -56.9 NC_005264.1 + 58368 0.69 0.736393
Target:  5'- gGCGGGGCCGGcgcgauaUGCGCcGGauuguccaagacugGGACUUCg -3'
miRNA:   3'- aUGCCUUGGCC-------AUGCG-CCg-------------CCUGAAG- -5'
24576 5' -56.9 NC_005264.1 + 71648 0.67 0.833027
Target:  5'- gUGCGcGAACCuGUGCGUGGCGuACa-- -3'
miRNA:   3'- -AUGC-CUUGGcCAUGCGCCGCcUGaag -5'
24576 5' -56.9 NC_005264.1 + 71832 0.66 0.863681
Target:  5'- cGCGGggUCGcgaauaacgacgcGUcGCgGCGGCGGugUUCc -3'
miRNA:   3'- aUGCCuuGGC-------------CA-UG-CGCCGCCugAAG- -5'
24576 5' -56.9 NC_005264.1 + 75214 0.66 0.885852
Target:  5'- cGCGGcugcAUCGGcccUGCGCGGCGGcCgUCu -3'
miRNA:   3'- aUGCCu---UGGCC---AUGCGCCGCCuGaAG- -5'
24576 5' -56.9 NC_005264.1 + 75708 0.67 0.849112
Target:  5'- gGCGcGAagACUGGUGCGCcccGCGGGCg-- -3'
miRNA:   3'- aUGC-CU--UGGCCAUGCGc--CGCCUGaag -5'
24576 5' -56.9 NC_005264.1 + 79915 0.66 0.864427
Target:  5'- cGCGuGGCCGacGUcUGCGGCGGACUcCa -3'
miRNA:   3'- aUGCcUUGGC--CAuGCGCCGCCUGAaG- -5'
24576 5' -56.9 NC_005264.1 + 83253 0.66 0.89256
Target:  5'- cGCuGAugCGcugGCGCGGCGaACUUCa -3'
miRNA:   3'- aUGcCUugGCca-UGCGCCGCcUGAAG- -5'
24576 5' -56.9 NC_005264.1 + 83718 0.71 0.613402
Target:  5'- gGCGGcGGCUaGGUACGCGGCGG-Ca-- -3'
miRNA:   3'- aUGCC-UUGG-CCAUGCGCCGCCuGaag -5'
24576 5' -56.9 NC_005264.1 + 95757 0.66 0.899045
Target:  5'- aUGgGGGAUCuGUACGCGGCGuGCg-- -3'
miRNA:   3'- -AUgCCUUGGcCAUGCGCCGCcUGaag -5'
24576 5' -56.9 NC_005264.1 + 96056 0.7 0.704039
Target:  5'- gGCGGGACCGuGUuaggaACGUGGgaGGACgagUCa -3'
miRNA:   3'- aUGCCUUGGC-CA-----UGCGCCg-CCUGa--AG- -5'
24576 5' -56.9 NC_005264.1 + 96260 0.67 0.856869
Target:  5'- aGCGaGAGCCuGUACcagcaggugGCGGCGGAgCUUg -3'
miRNA:   3'- aUGC-CUUGGcCAUG---------CGCCGCCU-GAAg -5'
24576 5' -56.9 NC_005264.1 + 97205 0.69 0.743142
Target:  5'- -uUGGuuACCGGUGCGCGcGCGGGu--- -3'
miRNA:   3'- auGCCu-UGGCCAUGCGC-CGCCUgaag -5'
24576 5' -56.9 NC_005264.1 + 98308 0.66 0.899045
Target:  5'- cGCGGAACCccccucCGCGGCGGcGCg-- -3'
miRNA:   3'- aUGCCUUGGccau--GCGCCGCC-UGaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.