miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24576 5' -56.9 NC_005264.1 + 162258 0.69 0.713926
Target:  5'- gGCGGGGCUGG--CG-GGCGGACUa- -3'
miRNA:   3'- aUGCCUUGGCCauGCgCCGCCUGAag -5'
24576 5' -56.9 NC_005264.1 + 159384 0.71 0.623521
Target:  5'- aUGCGGcACCGGgcgccacGgGCGGCGGACc-- -3'
miRNA:   3'- -AUGCCuUGGCCa------UgCGCCGCCUGaag -5'
24576 5' -56.9 NC_005264.1 + 158873 0.72 0.573136
Target:  5'- gGCGGuaaAGCCGGccgGCGCGGCcaGGACgUUCc -3'
miRNA:   3'- aUGCC---UUGGCCa--UGCGCCG--CCUG-AAG- -5'
24576 5' -56.9 NC_005264.1 + 156602 0.67 0.856869
Target:  5'- gACGGAGgCGGcaagucuCGCGGCGGccGCggCg -3'
miRNA:   3'- aUGCCUUgGCCau-----GCGCCGCC--UGaaG- -5'
24576 5' -56.9 NC_005264.1 + 155273 0.73 0.504457
Target:  5'- gGCGGAGCCGc-ACGUGGCGGAag-Cg -3'
miRNA:   3'- aUGCCUUGGCcaUGCGCCGCCUgaaG- -5'
24576 5' -56.9 NC_005264.1 + 154808 0.69 0.71294
Target:  5'- gGCGGAggGCgCGGUGgcgccguCGUGGCGGGCg-- -3'
miRNA:   3'- aUGCCU--UG-GCCAU-------GCGCCGCCUGaag -5'
24576 5' -56.9 NC_005264.1 + 154219 0.69 0.743142
Target:  5'- gGCGGugaagcgccuACCGGUGCGCGuuGCGGAg--- -3'
miRNA:   3'- aUGCCu---------UGGCCAUGCGC--CGCCUgaag -5'
24576 5' -56.9 NC_005264.1 + 149429 0.69 0.723745
Target:  5'- gGCGGucgcgcGCCGGUGCggagagcuGCGGCGGAg--- -3'
miRNA:   3'- aUGCCu-----UGGCCAUG--------CGCCGCCUgaag -5'
24576 5' -56.9 NC_005264.1 + 148286 0.66 0.89256
Target:  5'- gGCGGGagauucuggagACCGcgcgcGUGCGCGcCGGugUUCg -3'
miRNA:   3'- aUGCCU-----------UGGC-----CAUGCGCcGCCugAAG- -5'
24576 5' -56.9 NC_005264.1 + 146755 0.67 0.859917
Target:  5'- gGCGGAcCCGGcaacagcaagcgccGCGCGGCGGuucUCg -3'
miRNA:   3'- aUGCCUuGGCCa-------------UGCGCCGCCugaAG- -5'
24576 5' -56.9 NC_005264.1 + 137939 0.68 0.816226
Target:  5'- -gUGGuGCCGGUAuCGuuGCGcGACUUCg -3'
miRNA:   3'- auGCCuUGGCCAU-GCgcCGC-CUGAAG- -5'
24576 5' -56.9 NC_005264.1 + 135724 0.68 0.780726
Target:  5'- aACGGAauaccaagaaGCCGGggaaacaGCuGCGGCGGAUUaUCa -3'
miRNA:   3'- aUGCCU----------UGGCCa------UG-CGCCGCCUGA-AG- -5'
24576 5' -56.9 NC_005264.1 + 132625 0.73 0.485467
Target:  5'- gACGGGACCGGcgauCGCGGUcgGGACg-- -3'
miRNA:   3'- aUGCCUUGGCCau--GCGCCG--CCUGaag -5'
24576 5' -56.9 NC_005264.1 + 132598 0.67 0.849112
Target:  5'- gGCGGGACCGGggaaG-GGCGGAa--- -3'
miRNA:   3'- aUGCCUUGGCCaug-CgCCGCCUgaag -5'
24576 5' -56.9 NC_005264.1 + 129529 0.67 0.856869
Target:  5'- gACGGAACCacUGCGgGcGUGGGCUUa -3'
miRNA:   3'- aUGCCUUGGccAUGCgC-CGCCUGAAg -5'
24576 5' -56.9 NC_005264.1 + 125479 0.66 0.899045
Target:  5'- gGCGGAGaacuccUCGGcgGCGCGGCGaACgUCg -3'
miRNA:   3'- aUGCCUU------GGCCa-UGCGCCGCcUGaAG- -5'
24576 5' -56.9 NC_005264.1 + 122774 0.67 0.824712
Target:  5'- aGCGGGgccucuugccGCCGGgGCGCuGCGGGCc-- -3'
miRNA:   3'- aUGCCU----------UGGCCaUGCGcCGCCUGaag -5'
24576 5' -56.9 NC_005264.1 + 122429 0.8 0.208223
Target:  5'- cGCGGggUCGGUGCGCGGgGGAg--- -3'
miRNA:   3'- aUGCCuuGGCCAUGCGCCgCCUgaag -5'
24576 5' -56.9 NC_005264.1 + 121895 0.72 0.573136
Target:  5'- cUGCGGcugcgaucGACCGGgGCGCGGCGcGGCg-- -3'
miRNA:   3'- -AUGCC--------UUGGCCaUGCGCCGC-CUGaag -5'
24576 5' -56.9 NC_005264.1 + 121641 0.7 0.704039
Target:  5'- gGCGcGAGCCGaGcagGCGgGGCGGAguCUUCu -3'
miRNA:   3'- aUGC-CUUGGC-Ca--UGCgCCGCCU--GAAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.