miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24576 5' -56.9 NC_005264.1 + 32437 1.07 0.003362
Target:  5'- cUACGGAACCGGUACGCGGCGGACUUCu -3'
miRNA:   3'- -AUGCCUUGGCCAUGCGCCGCCUGAAG- -5'
24576 5' -56.9 NC_005264.1 + 135724 0.68 0.780726
Target:  5'- aACGGAauaccaagaaGCCGGggaaacaGCuGCGGCGGAUUaUCa -3'
miRNA:   3'- aUGCCU----------UGGCCa------UG-CGCCGCCUGA-AG- -5'
24576 5' -56.9 NC_005264.1 + 55806 0.68 0.810188
Target:  5'- cUACGaGAgcaacucaacauucaGCCGGUggcgGCGCGGCugacugggccucaGGGCUUCu -3'
miRNA:   3'- -AUGC-CU---------------UGGCCA----UGCGCCG-------------CCUGAAG- -5'
24576 5' -56.9 NC_005264.1 + 125479 0.66 0.899045
Target:  5'- gGCGGAGaacuccUCGGcgGCGCGGCGaACgUCg -3'
miRNA:   3'- aUGCCUU------GGCCa-UGCGCCGCcUGaAG- -5'
24576 5' -56.9 NC_005264.1 + 155273 0.73 0.504457
Target:  5'- gGCGGAGCCGc-ACGUGGCGGAag-Cg -3'
miRNA:   3'- aUGCCUUGGCcaUGCGCCGCCUgaaG- -5'
24576 5' -56.9 NC_005264.1 + 158873 0.72 0.573136
Target:  5'- gGCGGuaaAGCCGGccgGCGCGGCcaGGACgUUCc -3'
miRNA:   3'- aUGCC---UUGGCCa--UGCGCCG--CCUG-AAG- -5'
24576 5' -56.9 NC_005264.1 + 24873 0.71 0.613402
Target:  5'- -cCGGAGCCGGg--GCGGCacgaGGCUUCg -3'
miRNA:   3'- auGCCUUGGCCaugCGCCGc---CUGAAG- -5'
24576 5' -56.9 NC_005264.1 + 83718 0.71 0.613402
Target:  5'- gGCGGcGGCUaGGUACGCGGCGG-Ca-- -3'
miRNA:   3'- aUGCC-UUGG-CCAUGCGCCGCCuGaag -5'
24576 5' -56.9 NC_005264.1 + 154808 0.69 0.71294
Target:  5'- gGCGGAggGCgCGGUGgcgccguCGUGGCGGGCg-- -3'
miRNA:   3'- aUGCCU--UG-GCCAU-------GCGCCGCCUGaag -5'
24576 5' -56.9 NC_005264.1 + 121491 0.68 0.771504
Target:  5'- -cCGGAGCUGGgccuuCGCGGCuG-CUUCg -3'
miRNA:   3'- auGCCUUGGCCau---GCGCCGcCuGAAG- -5'
24576 5' -56.9 NC_005264.1 + 807 0.69 0.713926
Target:  5'- gUACGGc-UgGGUGCGCGGCcGGCUUUa -3'
miRNA:   3'- -AUGCCuuGgCCAUGCGCCGcCUGAAG- -5'
24576 5' -56.9 NC_005264.1 + 121641 0.7 0.704039
Target:  5'- gGCGcGAGCCGaGcagGCGgGGCGGAguCUUCu -3'
miRNA:   3'- aUGC-CUUGGC-Ca--UGCgCCGCCU--GAAG- -5'
24576 5' -56.9 NC_005264.1 + 122429 0.8 0.208223
Target:  5'- cGCGGggUCGGUGCGCGGgGGAg--- -3'
miRNA:   3'- aUGCCuuGGCCAUGCGCCgCCUgaag -5'
24576 5' -56.9 NC_005264.1 + 149429 0.69 0.723745
Target:  5'- gGCGGucgcgcGCCGGUGCggagagcuGCGGCGGAg--- -3'
miRNA:   3'- aUGCCu-----UGGCCAUG--------CGCCGCCUgaag -5'
24576 5' -56.9 NC_005264.1 + 132625 0.73 0.485467
Target:  5'- gACGGGACCGGcgauCGCGGUcgGGACg-- -3'
miRNA:   3'- aUGCCUUGGCCau--GCGCCG--CCUGaag -5'
24576 5' -56.9 NC_005264.1 + 3684 0.7 0.678076
Target:  5'- gUGCGGGGCCuGGcgcggaaaggGCGCacaguacuugccgcgGGCGGGCUUCu -3'
miRNA:   3'- -AUGCCUUGG-CCa---------UGCG---------------CCGCCUGAAG- -5'
24576 5' -56.9 NC_005264.1 + 58368 0.69 0.736393
Target:  5'- gGCGGGGCCGGcgcgauaUGCGCcGGauuguccaagacugGGACUUCg -3'
miRNA:   3'- aUGCCUUGGCC-------AUGCG-CCg-------------CCUGAAG- -5'
24576 5' -56.9 NC_005264.1 + 16569 0.68 0.807576
Target:  5'- gGCGGcGCCGGg--GCGGCGGcGCa-- -3'
miRNA:   3'- aUGCCuUGGCCaugCGCCGCC-UGaag -5'
24576 5' -56.9 NC_005264.1 + 26497 0.73 0.488294
Target:  5'- gUGCGGcGCCGaaccagcuucuacgcCGCGGCGGGCUUCa -3'
miRNA:   3'- -AUGCCuUGGCcau------------GCGCCGCCUGAAG- -5'
24576 5' -56.9 NC_005264.1 + 121895 0.72 0.573136
Target:  5'- cUGCGGcugcgaucGACCGGgGCGCGGCGcGGCg-- -3'
miRNA:   3'- -AUGCC--------UUGGCCaUGCGCCGC-CUGaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.