miRNA display CGI


Results 21 - 40 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24576 5' -56.9 NC_005264.1 + 121491 0.68 0.771504
Target:  5'- -cCGGAGCUGGgccuuCGCGGCuG-CUUCg -3'
miRNA:   3'- auGCCUUGGCCau---GCGCCGcCuGAAG- -5'
24576 5' -56.9 NC_005264.1 + 807 0.69 0.713926
Target:  5'- gUACGGc-UgGGUGCGCGGCcGGCUUUa -3'
miRNA:   3'- -AUGCCuuGgCCAUGCGCCGcCUGAAG- -5'
24576 5' -56.9 NC_005264.1 + 79915 0.66 0.864427
Target:  5'- cGCGuGGCCGacGUcUGCGGCGGACUcCa -3'
miRNA:   3'- aUGCcUUGGC--CAuGCGCCGCCUGAaG- -5'
24576 5' -56.9 NC_005264.1 + 55806 0.68 0.810188
Target:  5'- cUACGaGAgcaacucaacauucaGCCGGUggcgGCGCGGCugacugggccucaGGGCUUCu -3'
miRNA:   3'- -AUGC-CU---------------UGGCCA----UGCGCCG-------------CCUGAAG- -5'
24576 5' -56.9 NC_005264.1 + 162258 0.69 0.713926
Target:  5'- gGCGGGGCUGG--CG-GGCGGACUa- -3'
miRNA:   3'- aUGCCUUGGCCauGCgCCGCCUGAag -5'
24576 5' -56.9 NC_005264.1 + 71832 0.66 0.863681
Target:  5'- cGCGGggUCGcgaauaacgacgcGUcGCgGCGGCGGugUUCc -3'
miRNA:   3'- aUGCCuuGGC-------------CA-UG-CGCCGCCugAAG- -5'
24576 5' -56.9 NC_005264.1 + 154808 0.69 0.71294
Target:  5'- gGCGGAggGCgCGGUGgcgccguCGUGGCGGGCg-- -3'
miRNA:   3'- aUGCCU--UG-GCCAU-------GCGCCGCCUGaag -5'
24576 5' -56.9 NC_005264.1 + 121641 0.7 0.704039
Target:  5'- gGCGcGAGCCGaGcagGCGgGGCGGAguCUUCu -3'
miRNA:   3'- aUGC-CUUGGC-Ca--UGCgCCGCCU--GAAG- -5'
24576 5' -56.9 NC_005264.1 + 137939 0.68 0.816226
Target:  5'- -gUGGuGCCGGUAuCGuuGCGcGACUUCg -3'
miRNA:   3'- auGCCuUGGCCAU-GCgcCGC-CUGAAG- -5'
24576 5' -56.9 NC_005264.1 + 53978 0.66 0.89256
Target:  5'- -uUGGcGCCGGaACgGCGGCGaGACUg- -3'
miRNA:   3'- auGCCuUGGCCaUG-CGCCGC-CUGAag -5'
24576 5' -56.9 NC_005264.1 + 58368 0.69 0.736393
Target:  5'- gGCGGGGCCGGcgcgauaUGCGCcGGauuguccaagacugGGACUUCg -3'
miRNA:   3'- aUGCCUUGGCC-------AUGCG-CCg-------------CCUGAAG- -5'
24576 5' -56.9 NC_005264.1 + 149429 0.69 0.723745
Target:  5'- gGCGGucgcgcGCCGGUGCggagagcuGCGGCGGAg--- -3'
miRNA:   3'- aUGCCu-----UGGCCAUG--------CGCCGCCUgaag -5'
24576 5' -56.9 NC_005264.1 + 132598 0.67 0.849112
Target:  5'- gGCGGGACCGGggaaG-GGCGGAa--- -3'
miRNA:   3'- aUGCCUUGGCCaug-CgCCGCCUgaag -5'
24576 5' -56.9 NC_005264.1 + 120642 0.66 0.871781
Target:  5'- aUACGGGacGCCGGUggGCGCGGCu------ -3'
miRNA:   3'- -AUGCCU--UGGCCA--UGCGCCGccugaag -5'
24576 5' -56.9 NC_005264.1 + 50322 0.68 0.771504
Target:  5'- -cUGGAGCCGcgaGUACGCGGCGucGACc-- -3'
miRNA:   3'- auGCCUUGGC---CAUGCGCCGC--CUGaag -5'
24576 5' -56.9 NC_005264.1 + 3748 0.67 0.824712
Target:  5'- aGCGGGgccucuugccGCCGGgGCGCuGCGGGCc-- -3'
miRNA:   3'- aUGCCU----------UGGCCaUGCGcCGCCUGaag -5'
24576 5' -56.9 NC_005264.1 + 13598 0.73 0.485467
Target:  5'- gACGGGACCGGcgauCGCGGUcgGGACg-- -3'
miRNA:   3'- aUGCCUUGGCCau--GCGCCG--CCUGaag -5'
24576 5' -56.9 NC_005264.1 + 1615 0.66 0.871781
Target:  5'- aUACGGGacGCCGGUggGCGCGGCu------ -3'
miRNA:   3'- -AUGCCU--UGGCCA--UGCGCCGccugaag -5'
24576 5' -56.9 NC_005264.1 + 39847 0.72 0.573136
Target:  5'- gGCGGuaaAGCCGGccgGCGCGGCcaGGACgUUCc -3'
miRNA:   3'- aUGCC---UUGGCCa--UGCGCCG--CCUG-AAG- -5'
24576 5' -56.9 NC_005264.1 + 36246 0.73 0.504457
Target:  5'- gGCGGAGCCGc-ACGUGGCGGAag-Cg -3'
miRNA:   3'- aUGCCUUGGCcaUGCGCCGCCUgaaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.