miRNA display CGI


Results 41 - 60 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24576 5' -56.9 NC_005264.1 + 1615 0.66 0.871781
Target:  5'- aUACGGGacGCCGGUggGCGCGGCu------ -3'
miRNA:   3'- -AUGCCU--UGGCCA--UGCGCCGccugaag -5'
24576 5' -56.9 NC_005264.1 + 102226 0.66 0.878924
Target:  5'- cUGCGcGAGCCGGcUGcCGCGGCauacgagaagGGGCUc- -3'
miRNA:   3'- -AUGC-CUUGGCC-AU-GCGCCG----------CCUGAag -5'
24576 5' -56.9 NC_005264.1 + 83253 0.66 0.89256
Target:  5'- cGCuGAugCGcugGCGCGGCGaACUUCa -3'
miRNA:   3'- aUGcCUugGCca-UGCGCCGCcUGAAG- -5'
24576 5' -56.9 NC_005264.1 + 117828 0.66 0.899045
Target:  5'- aACGGGuucgaGGggagGCGCGGCGGAgUg- -3'
miRNA:   3'- aUGCCUugg--CCa---UGCGCCGCCUgAag -5'
24576 5' -56.9 NC_005264.1 + 3748 0.67 0.824712
Target:  5'- aGCGGGgccucuugccGCCGGgGCGCuGCGGGCc-- -3'
miRNA:   3'- aUGCCU----------UGGCCaUGCGcCGCCUGaag -5'
24576 5' -56.9 NC_005264.1 + 50322 0.68 0.771504
Target:  5'- -cUGGAGCCGcgaGUACGCGGCGucGACc-- -3'
miRNA:   3'- auGCCUUGGC---CAUGCGCCGC--CUGaag -5'
24576 5' -56.9 NC_005264.1 + 27662 0.68 0.771504
Target:  5'- cGCGGcgcucgGACCgaGGUACGCGGCuGGCcUCu -3'
miRNA:   3'- aUGCC------UUGG--CCAUGCGCCGcCUGaAG- -5'
24576 5' -56.9 NC_005264.1 + 36246 0.73 0.504457
Target:  5'- gGCGGAGCCGc-ACGUGGCGGAag-Cg -3'
miRNA:   3'- aUGCCUUGGCcaUGCGCCGCCUgaaG- -5'
24576 5' -56.9 NC_005264.1 + 39847 0.72 0.573136
Target:  5'- gGCGGuaaAGCCGGccgGCGCGGCcaGGACgUUCc -3'
miRNA:   3'- aUGCC---UUGGCCa--UGCGCCG--CCUG-AAG- -5'
24576 5' -56.9 NC_005264.1 + 2869 0.72 0.573136
Target:  5'- cUGCGGcugcgaucGACCGGgGCGCGGCGcGGCg-- -3'
miRNA:   3'- -AUGCC--------UUGGCCaUGCGCCGC-CUGaag -5'
24576 5' -56.9 NC_005264.1 + 159384 0.71 0.623521
Target:  5'- aUGCGGcACCGGgcgccacGgGCGGCGGACc-- -3'
miRNA:   3'- -AUGCCuUGGCCa------UgCGCCGCCUGaag -5'
24576 5' -56.9 NC_005264.1 + 51772 0.7 0.674055
Target:  5'- aGgGGAGCUc--GCGCGGCGGcACUUCg -3'
miRNA:   3'- aUgCCUUGGccaUGCGCCGCC-UGAAG- -5'
24576 5' -56.9 NC_005264.1 + 96056 0.7 0.704039
Target:  5'- gGCGGGACCGuGUuaggaACGUGGgaGGACgagUCa -3'
miRNA:   3'- aUGCCUUGGC-CA-----UGCGCCg-CCUGa--AG- -5'
24576 5' -56.9 NC_005264.1 + 2614 0.7 0.704039
Target:  5'- gGCGcGAGCCGaGcagGCGgGGCGGAguCUUCu -3'
miRNA:   3'- aUGC-CUUGGC-Ca--UGCgCCGCCU--GAAG- -5'
24576 5' -56.9 NC_005264.1 + 35782 0.69 0.71294
Target:  5'- gGCGGAggGCgCGGUGgcgccguCGUGGCGGGCg-- -3'
miRNA:   3'- aUGCCU--UG-GCCAU-------GCGCCGCCUGaag -5'
24576 5' -56.9 NC_005264.1 + 43231 0.69 0.713926
Target:  5'- gGCGGGGCUGG--CG-GGCGGACUa- -3'
miRNA:   3'- aUGCCUUGGCCauGCgCCGCCUGAag -5'
24576 5' -56.9 NC_005264.1 + 30402 0.69 0.723745
Target:  5'- gGCGGucgcgcGCCGGUGCggagagcuGCGGCGGAg--- -3'
miRNA:   3'- aUGCCu-----UGGCCAUG--------CGCCGCCUgaag -5'
24576 5' -56.9 NC_005264.1 + 97205 0.69 0.743142
Target:  5'- -uUGGuuACCGGUGCGCGcGCGGGu--- -3'
miRNA:   3'- auGCCu-UGGCCAUGCGC-CGCCUgaag -5'
24576 5' -56.9 NC_005264.1 + 154219 0.69 0.743142
Target:  5'- gGCGGugaagcgccuACCGGUGCGCGuuGCGGAg--- -3'
miRNA:   3'- aUGCCu---------UGGCCAUGCGC--CGCCUgaag -5'
24576 5' -56.9 NC_005264.1 + 2464 0.68 0.771504
Target:  5'- -cCGGAGCUGGgccuuCGCGGCuG-CUUCg -3'
miRNA:   3'- auGCCUUGGCCau---GCGCCGcCuGAAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.