miRNA display CGI


Results 21 - 40 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24576 5' -56.9 NC_005264.1 + 6452 0.66 0.899045
Target:  5'- gGCGGAGaacuccUCGGcgGCGCGGCGaACgUCg -3'
miRNA:   3'- aUGCCUU------GGCCa-UGCGCCGCcUGaAG- -5'
24576 5' -56.9 NC_005264.1 + 83253 0.66 0.89256
Target:  5'- cGCuGAugCGcugGCGCGGCGaACUUCa -3'
miRNA:   3'- aUGcCUugGCca-UGCGCCGCcUGAAG- -5'
24576 5' -56.9 NC_005264.1 + 102226 0.66 0.878924
Target:  5'- cUGCGcGAGCCGGcUGcCGCGGCauacgagaagGGGCUc- -3'
miRNA:   3'- -AUGC-CUUGGCC-AU-GCGCCG----------CCUGAag -5'
24576 5' -56.9 NC_005264.1 + 1615 0.66 0.871781
Target:  5'- aUACGGGacGCCGGUggGCGCGGCu------ -3'
miRNA:   3'- -AUGCCU--UGGCCA--UGCGCCGccugaag -5'
24576 5' -56.9 NC_005264.1 + 129529 0.67 0.856869
Target:  5'- gACGGAACCacUGCGgGcGUGGGCUUa -3'
miRNA:   3'- aUGCCUUGGccAUGCgC-CGCCUGAAg -5'
24576 5' -56.9 NC_005264.1 + 3748 0.67 0.824712
Target:  5'- aGCGGGgccucuugccGCCGGgGCGCuGCGGGCc-- -3'
miRNA:   3'- aUGCCU----------UGGCCaUGCGcCGCCUGaag -5'
24576 5' -56.9 NC_005264.1 + 71648 0.67 0.833027
Target:  5'- gUGCGcGAACCuGUGCGUGGCGuACa-- -3'
miRNA:   3'- -AUGC-CUUGGcCAUGCGCCGCcUGaag -5'
24576 5' -56.9 NC_005264.1 + 103130 0.67 0.833027
Target:  5'- cGCGGuAGCCGccgGCGCGGCGcGCggCg -3'
miRNA:   3'- aUGCC-UUGGCca-UGCGCCGCcUGaaG- -5'
24576 5' -56.9 NC_005264.1 + 13571 0.67 0.849112
Target:  5'- gGCGGGACCGGggaaG-GGCGGAa--- -3'
miRNA:   3'- aUGCCUUGGCCaug-CgCCGCCUgaag -5'
24576 5' -56.9 NC_005264.1 + 37575 0.67 0.856869
Target:  5'- gACGGAGgCGGcaagucuCGCGGCGGccGCggCg -3'
miRNA:   3'- aUGCCUUgGCCau-----GCGCCGCC--UGaaG- -5'
24576 5' -56.9 NC_005264.1 + 96260 0.67 0.856869
Target:  5'- aGCGaGAGCCuGUACcagcaggugGCGGCGGAgCUUg -3'
miRNA:   3'- aUGC-CUUGGcCAUG---------CGCCGCCU-GAAg -5'
24576 5' -56.9 NC_005264.1 + 83718 0.71 0.613402
Target:  5'- gGCGGcGGCUaGGUACGCGGCGG-Ca-- -3'
miRNA:   3'- aUGCC-UUGG-CCAUGCGCCGCCuGaag -5'
24576 5' -56.9 NC_005264.1 + 24873 0.71 0.613402
Target:  5'- -cCGGAGCCGGg--GCGGCacgaGGCUUCg -3'
miRNA:   3'- auGCCUUGGCCaugCGCCGc---CUGAAG- -5'
24576 5' -56.9 NC_005264.1 + 121895 0.72 0.573136
Target:  5'- cUGCGGcugcgaucGACCGGgGCGCGGCGcGGCg-- -3'
miRNA:   3'- -AUGCC--------UUGGCCaUGCGCCGC-CUGaag -5'
24576 5' -56.9 NC_005264.1 + 158873 0.72 0.573136
Target:  5'- gGCGGuaaAGCCGGccgGCGCGGCcaGGACgUUCc -3'
miRNA:   3'- aUGCC---UUGGCCa--UGCGCCG--CCUG-AAG- -5'
24576 5' -56.9 NC_005264.1 + 155273 0.73 0.504457
Target:  5'- gGCGGAGCCGc-ACGUGGCGGAag-Cg -3'
miRNA:   3'- aUGCCUUGGCcaUGCGCCGCCUgaaG- -5'
24576 5' -56.9 NC_005264.1 + 26497 0.73 0.488294
Target:  5'- gUGCGGcGCCGaaccagcuucuacgcCGCGGCGGGCUUCa -3'
miRNA:   3'- -AUGCCuUGGCcau------------GCGCCGCCUGAAG- -5'
24576 5' -56.9 NC_005264.1 + 132625 0.73 0.485467
Target:  5'- gACGGGACCGGcgauCGCGGUcgGGACg-- -3'
miRNA:   3'- aUGCCUUGGCCau--GCGCCG--CCUGaag -5'
24576 5' -56.9 NC_005264.1 + 122429 0.8 0.208223
Target:  5'- cGCGGggUCGGUGCGCGGgGGAg--- -3'
miRNA:   3'- aUGCCuuGGCCAUGCGCCgCCUgaag -5'
24576 5' -56.9 NC_005264.1 + 125479 0.66 0.899045
Target:  5'- gGCGGAGaacuccUCGGcgGCGCGGCGaACgUCg -3'
miRNA:   3'- aUGCCUU------GGCCa-UGCGCCGCcUGaAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.