miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24577 5' -55.4 NC_005264.1 + 68297 0.66 0.92491
Target:  5'- gGAGAGGcaUCUUGGCgGUaagGAUGGUCAa -3'
miRNA:   3'- -UUCUUCc-AGAACCGgCGg--UUGCCAGU- -5'
24577 5' -55.4 NC_005264.1 + 59856 0.66 0.92491
Target:  5'- ----uGGUgcaGGCCGCC-ACGGUCAu -3'
miRNA:   3'- uucuuCCAgaaCCGGCGGuUGCCAGU- -5'
24577 5' -55.4 NC_005264.1 + 149933 0.66 0.913454
Target:  5'- gGGGGAGGaCUgcgaggccgGGCgGCuCGACGGUCc -3'
miRNA:   3'- -UUCUUCCaGAa--------CCGgCG-GUUGCCAGu -5'
24577 5' -55.4 NC_005264.1 + 2703 0.66 0.909827
Target:  5'- gGAGGAGGgaguccagauaGGCCGCCcGCGGcCGg -3'
miRNA:   3'- -UUCUUCCagaa-------CCGGCGGuUGCCaGU- -5'
24577 5' -55.4 NC_005264.1 + 16768 0.67 0.873329
Target:  5'- --cGAGGUCccgaucGUCGCCGGCGGUCu -3'
miRNA:   3'- uucUUCCAGaac---CGGCGGUUGCCAGu -5'
24577 5' -55.4 NC_005264.1 + 84192 0.67 0.873329
Target:  5'- uGGGAcgAGGcacagGGCCGCCGcgGCGGUUAa -3'
miRNA:   3'- -UUCU--UCCagaa-CCGGCGGU--UGCCAGU- -5'
24577 5' -55.4 NC_005264.1 + 143643 0.67 0.865839
Target:  5'- --cAAGGUCgUGGg-GCCGACGGUCGg -3'
miRNA:   3'- uucUUCCAGaACCggCGGUUGCCAGU- -5'
24577 5' -55.4 NC_005264.1 + 148411 0.67 0.858132
Target:  5'- uGGGGAGGgca-GGCCGCCAuACGGg-- -3'
miRNA:   3'- -UUCUUCCagaaCCGGCGGU-UGCCagu -5'
24577 5' -55.4 NC_005264.1 + 147528 0.68 0.850215
Target:  5'- -cGAAGa-CUUGGCCGCCAucAUGGUa- -3'
miRNA:   3'- uuCUUCcaGAACCGGCGGU--UGCCAgu -5'
24577 5' -55.4 NC_005264.1 + 118265 0.69 0.789536
Target:  5'- aGAGcuGG-CgUGGuuGCCGGCGGUCGc -3'
miRNA:   3'- -UUCuuCCaGaACCggCGGUUGCCAGU- -5'
24577 5' -55.4 NC_005264.1 + 142200 0.7 0.751471
Target:  5'- -----cGUC-UGGaCCGCCAACGGUCGc -3'
miRNA:   3'- uucuucCAGaACC-GGCGGUUGCCAGU- -5'
24577 5' -55.4 NC_005264.1 + 21963 0.7 0.705601
Target:  5'- cGAGAGuGGUCgcggcauugguagGGCCGCCGGCuGUCGu -3'
miRNA:   3'- -UUCUU-CCAGaa-----------CCGGCGGUUGcCAGU- -5'
24577 5' -55.4 NC_005264.1 + 127007 0.72 0.629352
Target:  5'- -cGAAGGUCcgugcacgGGCCGCCAuuGCGGg-- -3'
miRNA:   3'- uuCUUCCAGaa------CCGGCGGU--UGCCagu -5'
24577 5' -55.4 NC_005264.1 + 64672 0.74 0.517028
Target:  5'- uAGggGGUUUgGGCCuGCCGGCGGgCAg -3'
miRNA:   3'- uUCuuCCAGAaCCGG-CGGUUGCCaGU- -5'
24577 5' -55.4 NC_005264.1 + 32617 1.06 0.004797
Target:  5'- cAAGAAGGUCUUGGCCGCCAACGGUCAc -3'
miRNA:   3'- -UUCUUCCAGAACCGGCGGUUGCCAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.