miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24578 3' -52.1 NC_005264.1 + 14233 0.66 0.987705
Target:  5'- cCAUgaGCUU--CG-GUCCCAAGACGGGa -3'
miRNA:   3'- cGUA--UGAAccGCaCAGGGUUCUGCCU- -5'
24578 3' -52.1 NC_005264.1 + 46590 0.66 0.986096
Target:  5'- cGCGUGCggaGGCucUGUCCCugcggggcgAGGACGGc -3'
miRNA:   3'- -CGUAUGaa-CCGc-ACAGGG---------UUCUGCCu -5'
24578 3' -52.1 NC_005264.1 + 63006 0.66 0.983769
Target:  5'- gGCGUGCUUGGCGcacuccagccuuacCCCGGGGuCGGc -3'
miRNA:   3'- -CGUAUGAACCGCaca-----------GGGUUCU-GCCu -5'
24578 3' -52.1 NC_005264.1 + 143171 0.66 0.982399
Target:  5'- aCGUAgUUGGCGaGUgCCCGAcgacGAUGGAa -3'
miRNA:   3'- cGUAUgAACCGCaCA-GGGUU----CUGCCU- -5'
24578 3' -52.1 NC_005264.1 + 7754 0.66 0.982399
Target:  5'- aCAUGCUUGGCcuc-CCCAcagaGGACGGc -3'
miRNA:   3'- cGUAUGAACCGcacaGGGU----UCUGCCu -5'
24578 3' -52.1 NC_005264.1 + 26962 0.67 0.979627
Target:  5'- cGCAgugGCUUGGCGUaGaUUCCGGGauuugacguggcacGCGGGu -3'
miRNA:   3'- -CGUa--UGAACCGCA-C-AGGGUUC--------------UGCCU- -5'
24578 3' -52.1 NC_005264.1 + 126274 0.69 0.933849
Target:  5'- cGCGaggACUUGGCGgagGUCggcgCCAGGACGa- -3'
miRNA:   3'- -CGUa--UGAACCGCa--CAG----GGUUCUGCcu -5'
24578 3' -52.1 NC_005264.1 + 7247 0.69 0.933849
Target:  5'- cGCGaggACUUGGCGgagGUCggcgCCAGGACGa- -3'
miRNA:   3'- -CGUa--UGAACCGCa--CAG----GGUUCUGCcu -5'
24578 3' -52.1 NC_005264.1 + 2523 0.69 0.928629
Target:  5'- cGCGggg--GGCGacuUCCCGAGACGGGg -3'
miRNA:   3'- -CGUaugaaCCGCac-AGGGUUCUGCCU- -5'
24578 3' -52.1 NC_005264.1 + 121550 0.69 0.928629
Target:  5'- cGCGggg--GGCGacuUCCCGAGACGGGg -3'
miRNA:   3'- -CGUaugaaCCGCac-AGGGUUCUGCCU- -5'
24578 3' -52.1 NC_005264.1 + 119501 0.7 0.898815
Target:  5'- gGC-UGCgcagGGCGUGcUCCGAGGCGGc -3'
miRNA:   3'- -CGuAUGaa--CCGCACaGGGUUCUGCCu -5'
24578 3' -52.1 NC_005264.1 + 111355 0.71 0.858344
Target:  5'- cGCGUACUacacgguuaaaggcGGCGUGUCCCAcGACuucaGGGu -3'
miRNA:   3'- -CGUAUGAa-------------CCGCACAGGGUuCUG----CCU- -5'
24578 3' -52.1 NC_005264.1 + 34215 1.12 0.005133
Target:  5'- cGCAUACUUGGCGUGUCCCAAGACGGAc -3'
miRNA:   3'- -CGUAUGAACCGCACAGGGUUCUGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.