miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24578 5' -58.1 NC_005264.1 + 78496 0.66 0.868739
Target:  5'- -aCgCGCCg-GUGCaCGCGGUGAggCCa -3'
miRNA:   3'- caGgGCGGagCACGcGCGCCAUUa-GG- -5'
24578 5' -58.1 NC_005264.1 + 137539 0.66 0.86141
Target:  5'- -gUCgGCCUCG-GCGaCGUGGUAggUCa -3'
miRNA:   3'- caGGgCGGAGCaCGC-GCGCCAUuaGG- -5'
24578 5' -58.1 NC_005264.1 + 30819 0.66 0.853884
Target:  5'- uUUCCGCCUCGUGCucgaacgggcucGCGUcGUcGUCg -3'
miRNA:   3'- cAGGGCGGAGCACG------------CGCGcCAuUAGg -5'
24578 5' -58.1 NC_005264.1 + 149845 0.66 0.853884
Target:  5'- uUUCCGCCUCGUGCucgaacgggcucGCGUcGUcGUCg -3'
miRNA:   3'- cAGGGCGGAGCACG------------CGCGcCAuUAGg -5'
24578 5' -58.1 NC_005264.1 + 108586 0.66 0.853884
Target:  5'- -cCCCGCucccaCUCGacacguugGCGCGCGGgg--CCg -3'
miRNA:   3'- caGGGCG-----GAGCa-------CGCGCGCCauuaGG- -5'
24578 5' -58.1 NC_005264.1 + 5040 0.66 0.846166
Target:  5'- gGUUCCGCgUCGUGgGCGCcgccuagcuGGgaagAcgCCg -3'
miRNA:   3'- -CAGGGCGgAGCACgCGCG---------CCa---UuaGG- -5'
24578 5' -58.1 NC_005264.1 + 70318 0.66 0.846166
Target:  5'- -cCCCGCCg---GCGCGCuGaccgAGUCCg -3'
miRNA:   3'- caGGGCGGagcaCGCGCGcCa---UUAGG- -5'
24578 5' -58.1 NC_005264.1 + 69149 0.66 0.846166
Target:  5'- -gCCCGCgCUacUGCcacgguaaGCGCGGUGAUCa -3'
miRNA:   3'- caGGGCG-GAgcACG--------CGCGCCAUUAGg -5'
24578 5' -58.1 NC_005264.1 + 149412 0.66 0.838265
Target:  5'- cGUCgCGUCUCGgcgGCG-GCGGUcgcGcgCCg -3'
miRNA:   3'- -CAGgGCGGAGCa--CGCgCGCCA---UuaGG- -5'
24578 5' -58.1 NC_005264.1 + 30385 0.66 0.838265
Target:  5'- cGUCgCGUCUCGgcgGCG-GCGGUcgcGcgCCg -3'
miRNA:   3'- -CAGgGCGGAGCa--CGCgCGCCA---UuaGG- -5'
24578 5' -58.1 NC_005264.1 + 8765 0.67 0.821934
Target:  5'- uUCCauaugaGCCUCuacgGCgGCGCGGUuguAUCCc -3'
miRNA:   3'- cAGGg-----CGGAGca--CG-CGCGCCAu--UAGG- -5'
24578 5' -58.1 NC_005264.1 + 4256 0.67 0.821934
Target:  5'- aGUCCCGgCUUGc-CGCGCGGgaa-CCg -3'
miRNA:   3'- -CAGGGCgGAGCacGCGCGCCauuaGG- -5'
24578 5' -58.1 NC_005264.1 + 100243 0.67 0.821934
Target:  5'- cGUCCgCGCCgcuacuuCGCGCGGUcaauuuuaucGAUCCg -3'
miRNA:   3'- -CAGG-GCGGagcac--GCGCGCCA----------UUAGG- -5'
24578 5' -58.1 NC_005264.1 + 123283 0.67 0.821934
Target:  5'- aGUCCCGgCUUGc-CGCGCGGgaa-CCg -3'
miRNA:   3'- -CAGGGCgGAGCacGCGCGCCauuaGG- -5'
24578 5' -58.1 NC_005264.1 + 156272 0.67 0.813519
Target:  5'- cGUCaUCGCCUCGgugGUGguCGCGGUGAacucgcagggucUCCc -3'
miRNA:   3'- -CAG-GGCGGAGCa--CGC--GCGCCAUU------------AGG- -5'
24578 5' -58.1 NC_005264.1 + 136671 0.67 0.813519
Target:  5'- -cCCCGCCgacaGUGC-CGCGaaAGUCCu -3'
miRNA:   3'- caGGGCGGag--CACGcGCGCcaUUAGG- -5'
24578 5' -58.1 NC_005264.1 + 3549 0.67 0.812669
Target:  5'- -gCCCGCCcccUCGUG-GCGUcuuuccuGGUGAUCg -3'
miRNA:   3'- caGGGCGG---AGCACgCGCG-------CCAUUAGg -5'
24578 5' -58.1 NC_005264.1 + 3450 0.67 0.804947
Target:  5'- gGUCcgCCGCC-CGUgGCGCcCGGUGccgcAUCCa -3'
miRNA:   3'- -CAG--GGCGGaGCA-CGCGcGCCAU----UAGG- -5'
24578 5' -58.1 NC_005264.1 + 148303 0.67 0.804947
Target:  5'- --aCCGCgCgCGUGCGCGcCGGUGuUCg -3'
miRNA:   3'- cagGGCG-GaGCACGCGC-GCCAUuAGg -5'
24578 5' -58.1 NC_005264.1 + 45567 0.67 0.787366
Target:  5'- -gCCCGUgUCG-GCGCGCacgAGUCCc -3'
miRNA:   3'- caGGGCGgAGCaCGCGCGccaUUAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.