miRNA display CGI


Results 1 - 20 of 207 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24579 3' -59.1 NC_005264.1 + 101295 0.65 0.824623
Target:  5'- aGCGCCGAcGugccagcuaugcccaGCGcgauaaucaugcccaGGUGCGGCcCGAGCa -3'
miRNA:   3'- -UGCGGUUuC---------------UGC---------------CCGCGCCGaGCUCG- -5'
24579 3' -59.1 NC_005264.1 + 142938 0.66 0.821304
Target:  5'- gGCGCCAccacaAAGcacccgaaauggcuaGCGcGGcCGCGGCggucucUCGGGCa -3'
miRNA:   3'- -UGCGGU-----UUC---------------UGC-CC-GCGCCG------AGCUCG- -5'
24579 3' -59.1 NC_005264.1 + 19426 0.66 0.81796
Target:  5'- gGCGCCGGguguGGCcgcgGGGCGCGGg-UGGGUu -3'
miRNA:   3'- -UGCGGUUu---CUG----CCCGCGCCgaGCUCG- -5'
24579 3' -59.1 NC_005264.1 + 122648 0.66 0.81796
Target:  5'- -gGCCGcgAGGGCGGGCGCGcugacaUUCGucGCg -3'
miRNA:   3'- ugCGGU--UUCUGCCCGCGCc-----GAGCu-CG- -5'
24579 3' -59.1 NC_005264.1 + 122101 0.66 0.81796
Target:  5'- uCGCCGc-GACuGGCgGCGGCcgaggacccguUCGGGCg -3'
miRNA:   3'- uGCGGUuuCUGcCCG-CGCCG-----------AGCUCG- -5'
24579 3' -59.1 NC_005264.1 + 11043 0.66 0.81796
Target:  5'- gAUGCCAaaucAAGGCGGG-GCcuGGCg-GGGCa -3'
miRNA:   3'- -UGCGGU----UUCUGCCCgCG--CCGagCUCG- -5'
24579 3' -59.1 NC_005264.1 + 3621 0.66 0.81796
Target:  5'- -gGCCGcgAGGGCGGGCGCGcugacaUUCGucGCg -3'
miRNA:   3'- ugCGGU--UUCUGCCCGCGCc-----GAGCu-CG- -5'
24579 3' -59.1 NC_005264.1 + 44680 0.66 0.81796
Target:  5'- cCGCCAGAcAUGGGCGgccaCGGCauaGAGUu -3'
miRNA:   3'- uGCGGUUUcUGCCCGC----GCCGag-CUCG- -5'
24579 3' -59.1 NC_005264.1 + 146404 0.66 0.81796
Target:  5'- cAC-CCGcGGGCaGGCcccGCGGCagUCGAGCg -3'
miRNA:   3'- -UGcGGUuUCUGcCCG---CGCCG--AGCUCG- -5'
24579 3' -59.1 NC_005264.1 + 3074 0.66 0.81796
Target:  5'- uCGCCGc-GACuGGCgGCGGCcgaggacccguUCGGGCg -3'
miRNA:   3'- uGCGGUuuCUGcCCG-CGCCG-----------AGCUCG- -5'
24579 3' -59.1 NC_005264.1 + 162013 0.66 0.81796
Target:  5'- cACGCCAGAGACaGaGGCuaaagcCGGC-CGcGCa -3'
miRNA:   3'- -UGCGGUUUCUG-C-CCGc-----GCCGaGCuCG- -5'
24579 3' -59.1 NC_005264.1 + 102767 0.66 0.81796
Target:  5'- -gGCUAGGGGCGGGC-CaGUUCGguGGCc -3'
miRNA:   3'- ugCGGUUUCUGCCCGcGcCGAGC--UCG- -5'
24579 3' -59.1 NC_005264.1 + 81552 0.66 0.81796
Target:  5'- --aCCAAAG-CGGGCGCaGCaccuuggUGAGCg -3'
miRNA:   3'- ugcGGUUUCuGCCCGCGcCGa------GCUCG- -5'
24579 3' -59.1 NC_005264.1 + 29487 0.66 0.817119
Target:  5'- uCGUCGAGGA-GGGcCGCGGuCUcuaguucCGAGCc -3'
miRNA:   3'- uGCGGUUUCUgCCC-GCGCC-GA-------GCUCG- -5'
24579 3' -59.1 NC_005264.1 + 158953 0.66 0.812895
Target:  5'- -aGCCAGAGAacucgacccCGGGUGgggccacggcgaccuCGGCUgCGAGUc -3'
miRNA:   3'- ugCGGUUUCU---------GCCCGC---------------GCCGA-GCUCG- -5'
24579 3' -59.1 NC_005264.1 + 39926 0.66 0.812895
Target:  5'- -aGCCAGAGAacucgacccCGGGUGgggccacggcgaccuCGGCUgCGAGUc -3'
miRNA:   3'- ugCGGUUUCU---------GCCCGC---------------GCCGA-GCUCG- -5'
24579 3' -59.1 NC_005264.1 + 69652 0.66 0.809487
Target:  5'- gACGCUuucuAGGuCGGGCacGCGGCgcugGGGCc -3'
miRNA:   3'- -UGCGGu---UUCuGCCCG--CGCCGag--CUCG- -5'
24579 3' -59.1 NC_005264.1 + 53571 0.66 0.809487
Target:  5'- uCGCgCAGAG-C-GGCGCGGCUUGcguuuuguGGCa -3'
miRNA:   3'- uGCG-GUUUCuGcCCGCGCCGAGC--------UCG- -5'
24579 3' -59.1 NC_005264.1 + 81510 0.66 0.809487
Target:  5'- -aGCCu--GGCGGGaaGCGGCUCaccuGCa -3'
miRNA:   3'- ugCGGuuuCUGCCCg-CGCCGAGcu--CG- -5'
24579 3' -59.1 NC_005264.1 + 136776 0.66 0.809487
Target:  5'- -aGCCcaguGAGuccuuuCGGcGCGUGGC-CGGGCg -3'
miRNA:   3'- ugCGGu---UUCu-----GCC-CGCGCCGaGCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.