Results 1 - 20 of 207 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
24579 | 3' | -59.1 | NC_005264.1 | + | 101295 | 0.65 | 0.824623 |
Target: 5'- aGCGCCGAcGugccagcuaugcccaGCGcgauaaucaugcccaGGUGCGGCcCGAGCa -3' miRNA: 3'- -UGCGGUUuC---------------UGC---------------CCGCGCCGaGCUCG- -5' |
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24579 | 3' | -59.1 | NC_005264.1 | + | 56587 | 0.66 | 0.806915 |
Target: 5'- cCGCCGucaGCaGGCGCGagcgccucgcgaccGCUCGAGUa -3' miRNA: 3'- uGCGGUuucUGcCCGCGC--------------CGAGCUCG- -5' |
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24579 | 3' | -59.1 | NC_005264.1 | + | 157686 | 0.66 | 0.800862 |
Target: 5'- -gGCUucGGACGaugcGGCGCGGC-CGcGCa -3' miRNA: 3'- ugCGGuuUCUGC----CCGCGCCGaGCuCG- -5' |
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24579 | 3' | -59.1 | NC_005264.1 | + | 52959 | 0.66 | 0.800862 |
Target: 5'- aGCGCCucuacgcGGCGGuGCugcgaacucagGCGGUgcgCGAGCa -3' miRNA: 3'- -UGCGGuuu----CUGCC-CG-----------CGCCGa--GCUCG- -5' |
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24579 | 3' | -59.1 | NC_005264.1 | + | 83185 | 0.66 | 0.800862 |
Target: 5'- uUGUCAgcGGCaGGCGCGGCgCGAacuauGCg -3' miRNA: 3'- uGCGGUuuCUGcCCGCGCCGaGCU-----CG- -5' |
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24579 | 3' | -59.1 | NC_005264.1 | + | 93395 | 0.66 | 0.800862 |
Target: 5'- uUG-CAGAGGCcGGCGCGGCUauaaggaagGGGCa -3' miRNA: 3'- uGCgGUUUCUGcCCGCGCCGAg--------CUCG- -5' |
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24579 | 3' | -59.1 | NC_005264.1 | + | 94570 | 0.66 | 0.792976 |
Target: 5'- gACGCaaaGAGGCGGcagcagcaggccgccCGCGGCgCGGGCa -3' miRNA: 3'- -UGCGgu-UUCUGCCc--------------GCGCCGaGCUCG- -5' |
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24579 | 3' | -59.1 | NC_005264.1 | + | 98761 | 0.66 | 0.792093 |
Target: 5'- -gGCCcgGAAGGCGGcucuGCuGCGGCUgacaGAGCu -3' miRNA: 3'- ugCGG--UUUCUGCC----CG-CGCCGAg---CUCG- -5' |
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24579 | 3' | -59.1 | NC_005264.1 | + | 87151 | 0.66 | 0.792093 |
Target: 5'- cGCGCCgAAAGAC-GGCGCuGCgcgCGAcuccGCa -3' miRNA: 3'- -UGCGG-UUUCUGcCCGCGcCGa--GCU----CG- -5' |
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24579 | 3' | -59.1 | NC_005264.1 | + | 69652 | 0.66 | 0.809487 |
Target: 5'- gACGCUuucuAGGuCGGGCacGCGGCgcugGGGCc -3' miRNA: 3'- -UGCGGu---UUCuGCCCG--CGCCGag--CUCG- -5' |
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24579 | 3' | -59.1 | NC_005264.1 | + | 44647 | 0.66 | 0.809487 |
Target: 5'- cGCGCCuuAGACuGGUGCGccaaGUUCGAcgaGCc -3' miRNA: 3'- -UGCGGuuUCUGcCCGCGC----CGAGCU---CG- -5' |
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24579 | 3' | -59.1 | NC_005264.1 | + | 81510 | 0.66 | 0.809487 |
Target: 5'- -aGCCu--GGCGGGaaGCGGCUCaccuGCa -3' miRNA: 3'- ugCGGuuuCUGCCCg-CGCCGAGcu--CG- -5' |
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24579 | 3' | -59.1 | NC_005264.1 | + | 146404 | 0.66 | 0.81796 |
Target: 5'- cAC-CCGcGGGCaGGCcccGCGGCagUCGAGCg -3' miRNA: 3'- -UGcGGUuUCUGcCCG---CGCCG--AGCUCG- -5' |
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24579 | 3' | -59.1 | NC_005264.1 | + | 3074 | 0.66 | 0.81796 |
Target: 5'- uCGCCGc-GACuGGCgGCGGCcgaggacccguUCGGGCg -3' miRNA: 3'- uGCGGUuuCUGcCCG-CGCCG-----------AGCUCG- -5' |
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24579 | 3' | -59.1 | NC_005264.1 | + | 162013 | 0.66 | 0.81796 |
Target: 5'- cACGCCAGAGACaGaGGCuaaagcCGGC-CGcGCa -3' miRNA: 3'- -UGCGGUUUCUG-C-CCGc-----GCCGaGCuCG- -5' |
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24579 | 3' | -59.1 | NC_005264.1 | + | 102767 | 0.66 | 0.81796 |
Target: 5'- -gGCUAGGGGCGGGC-CaGUUCGguGGCc -3' miRNA: 3'- ugCGGUUUCUGCCCGcGcCGAGC--UCG- -5' |
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24579 | 3' | -59.1 | NC_005264.1 | + | 81552 | 0.66 | 0.81796 |
Target: 5'- --aCCAAAG-CGGGCGCaGCaccuuggUGAGCg -3' miRNA: 3'- ugcGGUUUCuGCCCGCGcCGa------GCUCG- -5' |
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24579 | 3' | -59.1 | NC_005264.1 | + | 44680 | 0.66 | 0.81796 |
Target: 5'- cCGCCAGAcAUGGGCGgccaCGGCauaGAGUu -3' miRNA: 3'- uGCGGUUUcUGCCCGC----GCCGag-CUCG- -5' |
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24579 | 3' | -59.1 | NC_005264.1 | + | 3621 | 0.66 | 0.81796 |
Target: 5'- -gGCCGcgAGGGCGGGCGCGcugacaUUCGucGCg -3' miRNA: 3'- ugCGGU--UUCUGCCCGCGCc-----GAGCu-CG- -5' |
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24579 | 3' | -59.1 | NC_005264.1 | + | 39926 | 0.66 | 0.812895 |
Target: 5'- -aGCCAGAGAacucgacccCGGGUGgggccacggcgaccuCGGCUgCGAGUc -3' miRNA: 3'- ugCGGUUUCU---------GCCCGC---------------GCCGA-GCUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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