miRNA display CGI


Results 1 - 20 of 207 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24579 3' -59.1 NC_005264.1 + 34386 1.1 0.001306
Target:  5'- gACGCCAAAGACGGGCGCGGCUCGAGCu -3'
miRNA:   3'- -UGCGGUUUCUGCCCGCGCCGAGCUCG- -5'
24579 3' -59.1 NC_005264.1 + 41074 0.8 0.156902
Target:  5'- cGCGCCGuuaaaccuagAAGACGGGCcCGGCcgCGGGCg -3'
miRNA:   3'- -UGCGGU----------UUCUGCCCGcGCCGa-GCUCG- -5'
24579 3' -59.1 NC_005264.1 + 160101 0.8 0.156902
Target:  5'- cGCGCCGuuaaaccuagAAGACGGGCcCGGCcgCGGGCg -3'
miRNA:   3'- -UGCGGU----------UUCUGCCCGcGCCGa-GCUCG- -5'
24579 3' -59.1 NC_005264.1 + 6782 0.79 0.190983
Target:  5'- -aGCCAGGGAUGGGUGCGGCggcucaGAGg -3'
miRNA:   3'- ugCGGUUUCUGCCCGCGCCGag----CUCg -5'
24579 3' -59.1 NC_005264.1 + 125808 0.79 0.190983
Target:  5'- -aGCCAGGGAUGGGUGCGGCggcucaGAGg -3'
miRNA:   3'- ugCGGUUUCUGCCCGCGCCGag----CUCg -5'
24579 3' -59.1 NC_005264.1 + 13339 0.78 0.214939
Target:  5'- -aGCCGAAGggaACGGcGCgaaucgaGCGGCUCGAGCg -3'
miRNA:   3'- ugCGGUUUC---UGCC-CG-------CGCCGAGCUCG- -5'
24579 3' -59.1 NC_005264.1 + 52197 0.78 0.225972
Target:  5'- gUGCUGAGGGCcgugGGGCGCGGUggcgCGAGCu -3'
miRNA:   3'- uGCGGUUUCUG----CCCGCGCCGa---GCUCG- -5'
24579 3' -59.1 NC_005264.1 + 43898 0.77 0.236365
Target:  5'- gGCGCCGGAGACGauaGCGCGGCcgucgccucgacgUCGAGg -3'
miRNA:   3'- -UGCGGUUUCUGCc--CGCGCCG-------------AGCUCg -5'
24579 3' -59.1 NC_005264.1 + 159988 0.76 0.285212
Target:  5'- -aGCCGcAG-CGGGCGaCGGCgCGAGCg -3'
miRNA:   3'- ugCGGUuUCuGCCCGC-GCCGaGCUCG- -5'
24579 3' -59.1 NC_005264.1 + 40961 0.76 0.285212
Target:  5'- -aGCCGcAG-CGGGCGaCGGCgCGAGCg -3'
miRNA:   3'- ugCGGUuUCuGCCCGC-GCCGaGCUCG- -5'
24579 3' -59.1 NC_005264.1 + 129517 0.76 0.289788
Target:  5'- gGCGCCGGAGgcgacggaaccacuGCGGGCGUGGgCUUaGGCg -3'
miRNA:   3'- -UGCGGUUUC--------------UGCCCGCGCC-GAGcUCG- -5'
24579 3' -59.1 NC_005264.1 + 95462 0.75 0.305229
Target:  5'- cGCGCC---GGCGGGCGCaGCgagcgCGGGCg -3'
miRNA:   3'- -UGCGGuuuCUGCCCGCGcCGa----GCUCG- -5'
24579 3' -59.1 NC_005264.1 + 40539 0.75 0.312136
Target:  5'- uCGcCCAGGGACGuGGCgcuGCGGCUCcugGAGCg -3'
miRNA:   3'- uGC-GGUUUCUGC-CCG---CGCCGAG---CUCG- -5'
24579 3' -59.1 NC_005264.1 + 159566 0.75 0.312136
Target:  5'- uCGcCCAGGGACGuGGCgcuGCGGCUCcugGAGCg -3'
miRNA:   3'- uGC-GGUUUCUGC-CCG---CGCCGAG---CUCG- -5'
24579 3' -59.1 NC_005264.1 + 109104 0.74 0.348442
Target:  5'- gGCGCCGGAGACGGGCacgacgagaCGGaCUCGuucGCc -3'
miRNA:   3'- -UGCGGUUUCUGCCCGc--------GCC-GAGCu--CG- -5'
24579 3' -59.1 NC_005264.1 + 117672 0.74 0.356055
Target:  5'- cCGCCAAgagccAGugGuGGUGuCGGCgUCGAGCg -3'
miRNA:   3'- uGCGGUU-----UCugC-CCGC-GCCG-AGCUCG- -5'
24579 3' -59.1 NC_005264.1 + 80001 0.74 0.363785
Target:  5'- cGCGCgGAAGAgGaGGCGCGGCacaucuccgguUgGAGCg -3'
miRNA:   3'- -UGCGgUUUCUgC-CCGCGCCG-----------AgCUCG- -5'
24579 3' -59.1 NC_005264.1 + 19952 0.73 0.387662
Target:  5'- uCGCCGugaugGAGAaaGGCGCGGCgCGAGUc -3'
miRNA:   3'- uGCGGU-----UUCUgcCCGCGCCGaGCUCG- -5'
24579 3' -59.1 NC_005264.1 + 126102 0.73 0.395847
Target:  5'- -gGCCAGuAGGCGGGCaaggaaugcgcgGCGGCU-GAGCc -3'
miRNA:   3'- ugCGGUU-UCUGCCCG------------CGCCGAgCUCG- -5'
24579 3' -59.1 NC_005264.1 + 135690 0.73 0.429676
Target:  5'- -gGCCugcacGGACGGGC-CGGCccUCGGGCu -3'
miRNA:   3'- ugCGGuu---UCUGCCCGcGCCG--AGCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.