miRNA display CGI


Results 21 - 40 of 207 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24579 3' -59.1 NC_005264.1 + 44647 0.66 0.809487
Target:  5'- cGCGCCuuAGACuGGUGCGccaaGUUCGAcgaGCc -3'
miRNA:   3'- -UGCGGuuUCUGcCCGCGC----CGAGCU---CG- -5'
24579 3' -59.1 NC_005264.1 + 56587 0.66 0.806915
Target:  5'- cCGCCGucaGCaGGCGCGagcgccucgcgaccGCUCGAGUa -3'
miRNA:   3'- uGCGGUuucUGcCCGCGC--------------CGAGCUCG- -5'
24579 3' -59.1 NC_005264.1 + 141567 0.66 0.800862
Target:  5'- cCGCUGGAGAUGGcGUuaccaccuccGCGGCgcgcacacUCGAGCc -3'
miRNA:   3'- uGCGGUUUCUGCC-CG----------CGCCG--------AGCUCG- -5'
24579 3' -59.1 NC_005264.1 + 30509 0.66 0.800862
Target:  5'- -gGCCAuu-GCGGGaaGCGGCUCucGCg -3'
miRNA:   3'- ugCGGUuucUGCCCg-CGCCGAGcuCG- -5'
24579 3' -59.1 NC_005264.1 + 117905 0.66 0.800862
Target:  5'- cGCGCgCA---ACGGGCccGCGGUUCGcuuGCg -3'
miRNA:   3'- -UGCG-GUuucUGCCCG--CGCCGAGCu--CG- -5'
24579 3' -59.1 NC_005264.1 + 146000 0.66 0.800862
Target:  5'- -gGCCucuacGGCGuGCGCguuaugGGCUCGGGCg -3'
miRNA:   3'- ugCGGuuu--CUGCcCGCG------CCGAGCUCG- -5'
24579 3' -59.1 NC_005264.1 + 157686 0.66 0.800862
Target:  5'- -gGCUucGGACGaugcGGCGCGGC-CGcGCa -3'
miRNA:   3'- ugCGGuuUCUGC----CCGCGCCGaGCuCG- -5'
24579 3' -59.1 NC_005264.1 + 83185 0.66 0.800862
Target:  5'- uUGUCAgcGGCaGGCGCGGCgCGAacuauGCg -3'
miRNA:   3'- uGCGGUuuCUGcCCGCGCCGaGCU-----CG- -5'
24579 3' -59.1 NC_005264.1 + 52959 0.66 0.800862
Target:  5'- aGCGCCucuacgcGGCGGuGCugcgaacucagGCGGUgcgCGAGCa -3'
miRNA:   3'- -UGCGGuuu----CUGCC-CG-----------CGCCGa--GCUCG- -5'
24579 3' -59.1 NC_005264.1 + 93395 0.66 0.800862
Target:  5'- uUG-CAGAGGCcGGCGCGGCUauaaggaagGGGCa -3'
miRNA:   3'- uGCgGUUUCUGcCCGCGCCGAg--------CUCG- -5'
24579 3' -59.1 NC_005264.1 + 116551 0.66 0.799992
Target:  5'- gGCuaCGGAGGCGGcgucgauGCGCaGCUCG-GCg -3'
miRNA:   3'- -UGcgGUUUCUGCC-------CGCGcCGAGCuCG- -5'
24579 3' -59.1 NC_005264.1 + 94570 0.66 0.792976
Target:  5'- gACGCaaaGAGGCGGcagcagcaggccgccCGCGGCgCGGGCa -3'
miRNA:   3'- -UGCGgu-UUCUGCCc--------------GCGCCGaGCUCG- -5'
24579 3' -59.1 NC_005264.1 + 110581 0.66 0.792093
Target:  5'- gAUGCCGuGGcCGGGUGaguaGGCgggggcccCGAGCa -3'
miRNA:   3'- -UGCGGUuUCuGCCCGCg---CCGa-------GCUCG- -5'
24579 3' -59.1 NC_005264.1 + 128703 0.66 0.792093
Target:  5'- -gGCCuugggGGAGGCGGGCucGCGcCUCGAcGCu -3'
miRNA:   3'- ugCGG-----UUUCUGCCCG--CGCcGAGCU-CG- -5'
24579 3' -59.1 NC_005264.1 + 9676 0.66 0.792093
Target:  5'- -gGCCuugggGGAGGCGGGCucGCGcCUCGAcGCu -3'
miRNA:   3'- ugCGG-----UUUCUGCCCG--CGCcGAGCU-CG- -5'
24579 3' -59.1 NC_005264.1 + 98761 0.66 0.792093
Target:  5'- -gGCCcgGAAGGCGGcucuGCuGCGGCUgacaGAGCu -3'
miRNA:   3'- ugCGG--UUUCUGCC----CG-CGCCGAg---CUCG- -5'
24579 3' -59.1 NC_005264.1 + 87151 0.66 0.792093
Target:  5'- cGCGCCgAAAGAC-GGCGCuGCgcgCGAcuccGCa -3'
miRNA:   3'- -UGCGG-UUUCUGcCCGCGcCGa--GCU----CG- -5'
24579 3' -59.1 NC_005264.1 + 73711 0.66 0.792093
Target:  5'- gGCGCCAGuaccGACGGccuuGCGCGGguuCUCGuaagacGCg -3'
miRNA:   3'- -UGCGGUUu---CUGCC----CGCGCC---GAGCu-----CG- -5'
24579 3' -59.1 NC_005264.1 + 22831 0.66 0.792093
Target:  5'- -aGCCucagcGAGACGGGUaCGGa-CGGGCg -3'
miRNA:   3'- ugCGGu----UUCUGCCCGcGCCgaGCUCG- -5'
24579 3' -59.1 NC_005264.1 + 27562 0.66 0.792093
Target:  5'- uCGCCGAgaguuaAGACGGGgaaUGUcGCUUGGGCc -3'
miRNA:   3'- uGCGGUU------UCUGCCC---GCGcCGAGCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.