miRNA display CGI


Results 1 - 20 of 207 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24579 3' -59.1 NC_005264.1 + 244 0.7 0.569489
Target:  5'- gGCGCCAcagcGAGGCGGGC-C-GCUCGAc- -3'
miRNA:   3'- -UGCGGU----UUCUGCCCGcGcCGAGCUcg -5'
24579 3' -59.1 NC_005264.1 + 1552 0.67 0.774153
Target:  5'- cGCGCCGGcaauAGGCGGGCccCGGC-CGGa- -3'
miRNA:   3'- -UGCGGUU----UCUGCCCGc-GCCGaGCUcg -5'
24579 3' -59.1 NC_005264.1 + 1607 0.72 0.437519
Target:  5'- -gGCCAGGGAuacgggacgccggUGGGCGCGGCUCcaaccuGCc -3'
miRNA:   3'- ugCGGUUUCU-------------GCCCGCGCCGAGcu----CG- -5'
24579 3' -59.1 NC_005264.1 + 2876 0.71 0.521024
Target:  5'- uGCGaUCGAccgGGGCGcGGCGCGGCggggaGGGCg -3'
miRNA:   3'- -UGC-GGUU---UCUGC-CCGCGCCGag---CUCG- -5'
24579 3' -59.1 NC_005264.1 + 2997 0.72 0.447216
Target:  5'- aGCGCCGAc--UGGGCcgGCGGCUCG-GCu -3'
miRNA:   3'- -UGCGGUUucuGCCCG--CGCCGAGCuCG- -5'
24579 3' -59.1 NC_005264.1 + 3074 0.66 0.81796
Target:  5'- uCGCCGc-GACuGGCgGCGGCcgaggacccguUCGGGCg -3'
miRNA:   3'- uGCGGUuuCUGcCCG-CGCCG-----------AGCUCG- -5'
24579 3' -59.1 NC_005264.1 + 3288 0.68 0.698266
Target:  5'- aGCGCCAGAGucgugagcucgcGCGGGauCGCGcGC-CGuGCa -3'
miRNA:   3'- -UGCGGUUUC------------UGCCC--GCGC-CGaGCuCG- -5'
24579 3' -59.1 NC_005264.1 + 3621 0.66 0.81796
Target:  5'- -gGCCGcgAGGGCGGGCGCGcugacaUUCGucGCg -3'
miRNA:   3'- ugCGGU--UUCUGCCCGCGCc-----GAGCu-CG- -5'
24579 3' -59.1 NC_005264.1 + 3623 0.7 0.603081
Target:  5'- gGCGCUguGGGCgGGGUggggguuucugggagGCGGUUUGAGCu -3'
miRNA:   3'- -UGCGGuuUCUG-CCCG---------------CGCCGAGCUCG- -5'
24579 3' -59.1 NC_005264.1 + 3794 0.68 0.717721
Target:  5'- cCGCCGAucugcguGGCGGucCGCGaGUUCGGGCc -3'
miRNA:   3'- uGCGGUUu------CUGCCc-GCGC-CGAGCUCG- -5'
24579 3' -59.1 NC_005264.1 + 4269 0.66 0.783187
Target:  5'- cGCGCgGGAaccGCGGG-GCGGCggcagaGAGCa -3'
miRNA:   3'- -UGCGgUUUc--UGCCCgCGCCGag----CUCG- -5'
24579 3' -59.1 NC_005264.1 + 5209 0.67 0.734043
Target:  5'- cGCGCCGc-GGCGaGGCgaagcucuucuuccGCGGCcUCGGGUa -3'
miRNA:   3'- -UGCGGUuuCUGC-CCG--------------CGCCG-AGCUCG- -5'
24579 3' -59.1 NC_005264.1 + 5279 0.71 0.521979
Target:  5'- -gGCCGGAcGGCGGG-GCGGCggcugacccguggggCGGGCg -3'
miRNA:   3'- ugCGGUUU-CUGCCCgCGCCGa--------------GCUCG- -5'
24579 3' -59.1 NC_005264.1 + 6782 0.79 0.190983
Target:  5'- -aGCCAGGGAUGGGUGCGGCggcucaGAGg -3'
miRNA:   3'- ugCGGUUUCUGCCCGCGCCGag----CUCg -5'
24579 3' -59.1 NC_005264.1 + 7268 0.67 0.755733
Target:  5'- gGCGCCAggacgAAGAC-GGCGgGGC-CuAGCg -3'
miRNA:   3'- -UGCGGU-----UUCUGcCCGCgCCGaGcUCG- -5'
24579 3' -59.1 NC_005264.1 + 7856 0.67 0.727349
Target:  5'- cCGCUAGAuuGugGGG-GCGGCgUCG-GCg -3'
miRNA:   3'- uGCGGUUU--CugCCCgCGCCG-AGCuCG- -5'
24579 3' -59.1 NC_005264.1 + 8379 0.67 0.746364
Target:  5'- gGCGCC--GGACGcGGCGCGuugaaGCUgccgGAGCu -3'
miRNA:   3'- -UGCGGuuUCUGC-CCGCGC-----CGAg---CUCG- -5'
24579 3' -59.1 NC_005264.1 + 9338 0.68 0.668709
Target:  5'- cCGCCAGGGGCGGcCGCcguuuugccGGCa-GAGCa -3'
miRNA:   3'- uGCGGUUUCUGCCcGCG---------CCGagCUCG- -5'
24579 3' -59.1 NC_005264.1 + 9503 0.67 0.764999
Target:  5'- -aGCCAgcGuCaGGCGCGGCgcccUCGAGg -3'
miRNA:   3'- ugCGGUuuCuGcCCGCGCCG----AGCUCg -5'
24579 3' -59.1 NC_005264.1 + 9676 0.66 0.792093
Target:  5'- -gGCCuugggGGAGGCGGGCucGCGcCUCGAcGCu -3'
miRNA:   3'- ugCGG-----UUUCUGCCCG--CGCcGAGCU-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.