miRNA display CGI


Results 1 - 20 of 207 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24579 3' -59.1 NC_005264.1 + 34386 1.1 0.001306
Target:  5'- gACGCCAAAGACGGGCGCGGCUCGAGCu -3'
miRNA:   3'- -UGCGGUUUCUGCCCGCGCCGAGCUCG- -5'
24579 3' -59.1 NC_005264.1 + 121902 0.71 0.521024
Target:  5'- uGCGaUCGAccgGGGCGcGGCGCGGCggggaGGGCg -3'
miRNA:   3'- -UGC-GGUU---UCUGC-CCGCGCCGag---CUCG- -5'
24579 3' -59.1 NC_005264.1 + 35976 0.71 0.530601
Target:  5'- uCGCCuGGAGG-GGGCGCGGa--GAGCg -3'
miRNA:   3'- uGCGG-UUUCUgCCCGCGCCgagCUCG- -5'
24579 3' -59.1 NC_005264.1 + 101295 0.65 0.824623
Target:  5'- aGCGCCGAcGugccagcuaugcccaGCGcgauaaucaugcccaGGUGCGGCcCGAGCa -3'
miRNA:   3'- -UGCGGUUuC---------------UGC---------------CCGCGCCGaGCUCG- -5'
24579 3' -59.1 NC_005264.1 + 52197 0.78 0.225972
Target:  5'- gUGCUGAGGGCcgugGGGCGCGGUggcgCGAGCu -3'
miRNA:   3'- uGCGGUUUCUG----CCCGCGCCGa---GCUCG- -5'
24579 3' -59.1 NC_005264.1 + 159988 0.76 0.285212
Target:  5'- -aGCCGcAG-CGGGCGaCGGCgCGAGCg -3'
miRNA:   3'- ugCGGUuUCuGCCCGC-GCCGaGCUCG- -5'
24579 3' -59.1 NC_005264.1 + 19952 0.73 0.387662
Target:  5'- uCGCCGugaugGAGAaaGGCGCGGCgCGAGUc -3'
miRNA:   3'- uGCGGU-----UUCUgcCCGCGCCGaGCUCG- -5'
24579 3' -59.1 NC_005264.1 + 17140 0.73 0.433152
Target:  5'- uACGgCGucGAgGGGCGCGGCUacaggauaauccgaGAGCu -3'
miRNA:   3'- -UGCgGUuuCUgCCCGCGCCGAg-------------CUCG- -5'
24579 3' -59.1 NC_005264.1 + 105084 0.72 0.465146
Target:  5'- -aGCCGuauGuAUGGGCGCuGUUCGAGCu -3'
miRNA:   3'- ugCGGUuu-C-UGCCCGCGcCGAGCUCG- -5'
24579 3' -59.1 NC_005264.1 + 25093 0.71 0.511516
Target:  5'- gGCGCCGGGGACaagcgGGGCagacuuagcGCGGCgaagucCGAGUa -3'
miRNA:   3'- -UGCGGUUUCUG-----CCCG---------CGCCGa-----GCUCG- -5'
24579 3' -59.1 NC_005264.1 + 17017 0.72 0.487145
Target:  5'- gACGgCAAAGGCGGcgaucgucgccagcaGCGCGGCcgcuaaGAGCa -3'
miRNA:   3'- -UGCgGUUUCUGCC---------------CGCGCCGag----CUCG- -5'
24579 3' -59.1 NC_005264.1 + 2997 0.72 0.447216
Target:  5'- aGCGCCGAc--UGGGCcgGCGGCUCG-GCu -3'
miRNA:   3'- -UGCGGUUucuGCCCG--CGCCGAGCuCG- -5'
24579 3' -59.1 NC_005264.1 + 160101 0.8 0.156902
Target:  5'- cGCGCCGuuaaaccuagAAGACGGGCcCGGCcgCGGGCg -3'
miRNA:   3'- -UGCGGU----------UUCUGCCCGcGCCGa-GCUCG- -5'
24579 3' -59.1 NC_005264.1 + 34129 0.71 0.492722
Target:  5'- cUGCCucugguGACGGGCGCguaGGCuUCGGGUc -3'
miRNA:   3'- uGCGGuuu---CUGCCCGCG---CCG-AGCUCG- -5'
24579 3' -59.1 NC_005264.1 + 125808 0.79 0.190983
Target:  5'- -aGCCAGGGAUGGGUGCGGCggcucaGAGg -3'
miRNA:   3'- ugCGGUUUCUGCCCGCGCCGag----CUCg -5'
24579 3' -59.1 NC_005264.1 + 120634 0.72 0.437519
Target:  5'- -gGCCAGGGAuacgggacgccggUGGGCGCGGCUCcaaccuGCc -3'
miRNA:   3'- ugCGGUUUCU-------------GCCCGCGCCGAGcu----CG- -5'
24579 3' -59.1 NC_005264.1 + 41639 0.71 0.492722
Target:  5'- -gGCCAGAuGCGGcaGCGCGGC-CGGGUc -3'
miRNA:   3'- ugCGGUUUcUGCC--CGCGCCGaGCUCG- -5'
24579 3' -59.1 NC_005264.1 + 124306 0.71 0.521979
Target:  5'- -gGCCGGAcGGCGGG-GCGGCggcugacccguggggCGGGCg -3'
miRNA:   3'- ugCGGUUU-CUGCCCgCGCCGa--------------GCUCG- -5'
24579 3' -59.1 NC_005264.1 + 13339 0.78 0.214939
Target:  5'- -aGCCGAAGggaACGGcGCgaaucgaGCGGCUCGAGCg -3'
miRNA:   3'- ugCGGUUUC---UGCC-CG-------CGCCGAGCUCG- -5'
24579 3' -59.1 NC_005264.1 + 159566 0.75 0.312136
Target:  5'- uCGcCCAGGGACGuGGCgcuGCGGCUCcugGAGCg -3'
miRNA:   3'- uGC-GGUUUCUGC-CCG---CGCCGAG---CUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.